Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01792 ATGTCTCTCCAAAATAAGTATCAACAACTTCCAGATGTCACAAGATCTAGTGCTATGAACAAAGCCTCAATTATAGTGGATGCCTCCAAATACATACAAGATTTGAAGCAAAAAGTGGAAGGACTCAACTCTGAGTTAGGATCAATTGTTGAATCATCAACCCTTCAAATGGATGACCAACCTAAGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCCTAATCAATGTGCTCATAGAAAAGAATAGACCTGGTATGTTGGTGAAAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTGCTTGATGCTAGGGTTTCGTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGATAGTCACAAGGACGACAGTATCAACGAGCAAGTGGTGAAGCAAGCAGTGTTGCAAGCTATCAAGAACACGGACGACTAA 435 0.4115 MSLQNKYQQLPDVTRSSAMNKASIIVDASKYIQDLKQKVEGLNSELGSIVESSTLQMDDQPKVSVKTLEKGFLINVLIEKNRPGMLVKILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINEQVVKQAVLQAIKNTDD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01792 144 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 140 - -
Trre13g01792 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 51 IPR036638 GO:0046983
Trre13g01792 144 Coils Coil 25 52 - -
Trre13g01792 144 CDD ACT_UUR-ACR-like 80 139 - -
Trre13g01792 144 ProSiteProfiles ACT domain profile. 74 144 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01792 Trre-Chr13 15053587 15057106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01792 - - mtr:11442077 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01792 13 15053587 15057106 Trre13g01792 13 15053587 15057106 ECH
Trre13g01792 13 15053587 15057106 Trre9g04439 9 52020422 52024243 ECH
Trre5g00879 5 5967372 5968912 Trre13g01792 13 15053587 15057106 ECH
Trre13g01792 13 15053587 15057106 Trre5g00879 5 5967372 5968912 ECH