Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01784 ATGGCAGATCCTGCTAGTAATGGAGGTCTTGAGAGAGATGTTGAACAAGCGCTTGTTGTTTTGAAGAAAGGAAGTCAGTTAATAAAGTATAGCCGAAAAGCGAAGCCGAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAGGGAAAGAACTCTAAAACTATCTTTGGTTTCACGCATTATTCCTGGACAAAGAACCATTGTGTTTAGAAGATATTTACAACCAGAAAAGGATTATCTTTCATTTTCACTTGTTTATAATAACGGAGAACGGACACTTGATCTGATATGCAAGGACAAAGCTGAAGCAGAGGTGTGGTTTGCAGGGCTTAAGGCATTAATTTCCACTGGAAGGAATAATAAGCTAACTGGAAGTGAATTATCATATGATGGTGTTGATTTTATTCCGAATAGTCGCCCTTTTGGTGCAGCATTAGACTTTGCTACAAGCTTTTCTCGTGGTAGAGTCTCGACTGATTCAAATCCTAGTGACTCTTCATTGTGTTGGTCGAACTCAGATGTGGGGATAGATCGTACAAATATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCTAGTACAACACCTAGCTGTTCAAGTGTAGGATCGGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGTGGTTTCACCCGATGGAACCGGCAATCAATTCCCTTCCACAACAGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTGCAACAGATTGCGTCCGGTGTACGCCACATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGGAATCGATAAAGATTTCGGTCGCCCTCAACTTGTTGAGTTTTTAGCGGTTACTAATGTAGAGATTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCTGTTTCAGACGAATTATTCTCATGGGGTGATGGTAAATATAATGTTGGACTTCTCGGACATGGTACCGATGTTAGCCATTGGATACCAAAGAGAATTAGCGGTCCTTTGGAAGGACTTCAAGTTATATCTATTGCGTGTGGTACATGGCATTCAGCGTTGGCAACTTCTAACGGAAAACTTTTCACTTTCGGTGATGGAACATTTGGTGTACTGGGTCATGGAAATAGAGAGAGTGTTTCATATCCAAAAGAGGTTCAATTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACCGCGGCTATTGTAGAGGTTACGTTTCAATCAGGTTCAAATGTTTCATCTCGAAAGCTCTTCACTTGGGGAGATGGAGACAAATATCGTTTAGGACATGGAAACAAGGAAACATATCTTCAACCTACTTGTGTCTCAACACTCATCGAATATAATTTCCACCAGATCGCATGTGGACACACTATGACCATTGCTCTCACTACTTCCGGCCATTTATTTACTATGGGAGGCACTGAACATGGTCAACTCGGAAATTCTTCATCTGATGGAAAAATACCTATACTAGTACAAGACACATTGGTGGGTGAATTTGTCGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCATTGACTTCAAGGAGTGAATTATTTACTTGGGGTAAAGGTGCAAATGGAAGATTGGGACATGGAGACATAGATAATAGAAAATCTCCGACATTGGTTGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGCGGCTCAAGTTTCACGTCTTGCATATGCATTCATAAGTGGGTATCTGGAGTTGACCAATCCGCTTGTACCGGTTGTAGACAACCGTTTGGTTTTACTAGGAAAAGGCATAATTGTTATAATTGCGGATTAGTACATTGTCATGGTTGCAGTTCAAGAAAAGTTATGAAAGCAGCATTGGCTCCAACACCAGGAAAGCCTCACCGTGTATGTGATTCTTGCTACGCTAAGCTTAAAGCTGTCGAGGCAAACGCGGCTGCGAATCTTAATAGAAAAATTACTACTACGCAACCTCGTAGTTCTATTGATGGAAGGGATAGATTTGGCCAAGGTGAAATAACAAGGTCTACAAAAATTCTTTTTCCGCCTTTCTCAGAACCACTAAAATATCTTGAGATGAGAACTAATATGCTCGGAAATCCTTCCATGCTATCAAATTCTCAAATTCCATCACTTACACAAATGAAAGACATGTCATTTCCAAGTTCAACAACTCCTATTCAAAATGGTATGAAACTTAATATAGCTCCAACTCCGCCAGCAACTCCACCTCTCAGTTCAAGATCAGTATCCCCATATGCGAGAAGGCCAAGTCCGCCACGTTCTTCCAATCCGGGATTTTCAAGAAGTCTTATCGATAGTTTGAAGAAGACAAATGAGCTTTTGAACCAAGAAGTCTCAAAATTGCAGAACCAAAATCGAAGTTTGAAGCAAAAAAGTATCATGGAAATTCAAAACCTACAGAAAAACATTAAGGATGCTACCTCATTGGCCGAAGAAGAATCTTCGAAACATAAAGCCGTCAAAGAAAATCTTGAGTCCATCATAGTTCAGATCAAAGAAATGGCTGAGCAATTTCCACCAGAAGTTTTAGAGAGTGAAAAATTTAGAAACATGATTATTCAAGCTGAAAATATTCTAGATGGAAATTCAAAATCTGAAATATCTTCTATTGTACCATCAAATTTGGACTCTGAGCAACAAAGTGAGCCTGTTTCAAACAATGGTTCATATGAAGAGAAAGAACGAATCGAAGAAACTAATGAAGCTGCAGAAATGAATCCATCTCAAGATGCAGGAAATGTCTTCCAAGAAAGTAATGGATCATCTTCATCTAATACTGAAGCAACAGCGGCACCATCACAAAGCTCTGAAAATGATTCAAGGTCATTGAACCCTTCAAGATCAGTGAGAGAAGGAGAAACACAAATCATTGAACAATTCGAACCGGGCGTTTATGTGACACTAATAGTAAAGCCTAATGGTAACAAAATTTTCAAACGTGTTAGATTCAGTAAAAGAAGGTTTGATGAACATCAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGCTTCGAAAATATAGCCCACAAGCGAAAAATCTTCAAGGTGTAGTGCCGTCATCTAGCAGTACCGCACCACCTGCTGGAGAAAACATTAATCCTGAAGGTGCGGCGTCAACTAGTAGTACTCCACAACCTACTGAAGAAAATGTTGAGGCAACACCTTCTTAA 3306 0.4005 MADPASNGGLERDVEQALVVLKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISHKRERTLKLSLVSRIIPGQRTIVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRNNKLTGSELSYDGVDFIPNSRPFGAALDFATSFSRGRVSTDSNPSDSSLCWSNSDVGIDRTNMQGRTSIGDGFRVSVSSTTPSCSSVGSGPDDIESLGDVYIWGEVWADVVSPDGTGNQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVEIVACGENHTCAVSVSDELFSWGDGKYNVGLLGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEHGQLGNSSSDGKIPILVQDTLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGHGDIDNRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYAKLKAVEANAAANLNRKITTTQPRSSIDGRDRFGQGEITRSTKILFPPFSEPLKYLEMRTNMLGNPSMLSNSQIPSLTQMKDMSFPSSTTPIQNGMKLNIAPTPPATPPLSSRSVSPYARRPSPPRSSNPGFSRSLIDSLKKTNELLNQEVSKLQNQNRSLKQKSIMEIQNLQKNIKDATSLAEEESSKHKAVKENLESIIVQIKEMAEQFPPEVLESEKFRNMIIQAENILDGNSKSEISSIVPSNLDSEQQSEPVSNNGSYEEKERIEETNEAAEMNPSQDAGNVFQESNGSSSSNTEATAAPSQSSENDSRSLNPSRSVREGETQIIEQFEPGVYVTLIVKPNGNKIFKRVRFSKRRFDEHQAEEWWNTNKDRVLRKYSPQAKNLQGVVPSSSSTAPPAGENINPEGAASTSSTPQPTEENVEATPS 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01784 1101 MobiDBLite consensus disorder prediction 1058 1101 - -
Trre13g01784 1101 Gene3D - 201 446 IPR009091 -
Trre13g01784 1101 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre13g01784 1101 SUPERFAMILY PH domain-like 13 123 - -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 916 995 - -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 916 931 - -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 336 386 IPR000408 -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 455 501 IPR000408 -
Trre13g01784 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Trre13g01784 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1052 IPR013591 -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 946 995 - -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Trre13g01784 1101 SUPERFAMILY FYVE/PHD zinc finger 609 678 IPR011011 -
Trre13g01784 1101 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Trre13g01784 1101 Pfam Transcription factor BRX N-terminal domain 856 892 IPR027988 -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 753 768 - -
Trre13g01784 1101 SMART fyve_4 607 676 IPR000306 GO:0046872
Trre13g01784 1101 MobiDBLite consensus disorder prediction 783 806 - -
Trre13g01784 1101 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Trre13g01784 1101 SUPERFAMILY RCC1/BLIP-II 224 610 IPR009091 -
Trre13g01784 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 686 IPR013083 -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 1055 1101 - -
Trre13g01784 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Trre13g01784 1101 Gene3D - 11 130 IPR011993 -
Trre13g01784 1101 MobiDBLite consensus disorder prediction 753 806 - -
Trre13g01784 1101 Gene3D - 447 612 IPR009091 -
Trre13g01784 1101 CDD FYVE_like_SF 618 671 - -
Trre13g01784 1101 CDD PH_PLC_plant-like 12 124 - -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Trre13g01784 1101 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Trre13g01784 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 867 - -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Trre13g01784 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Trre13g01784 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 444 - -
Trre13g01784 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Trre13g01784 1101 Coils Coil 808 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01784 Trre-Chr13 14966432 14971269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01784 995 1062 Major Intrinsic Protein MIP AT1G31880 38.235 1.36e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01784 - - gmx:100779684 1534.62