Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01772 ATGTGTGGAAATAGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCGCCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACTACTGCCACCAACGCTTTGGTTGCTTAG 297 0.4209 MCGNRLAPEIPEDLYHLIKKVVSIRLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHRLARYYKKTKKLPPVWKYESTTATNALVA 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01772 98 FunFam 40S ribosomal protein S13 29 98 - -
Trre13g01772 98 SUPERFAMILY S15/NS1 RNA-binding domain 26 88 IPR009068 -
Trre13g01772 98 PANTHER RIBOSOMAL PROTEIN S15P/S13E 5 25 IPR023029 -
Trre13g01772 98 Gene3D - 28 98 - -
Trre13g01772 98 Gene3D - 8 27 - -
Trre13g01772 98 Pfam Ribosomal protein S15 29 89 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre13g01772 98 ProSitePatterns Ribosomal protein S15 signature. 44 74 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre13g01772 98 CDD Ribosomal_S15p_S13e 28 89 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre13g01772 98 SMART Ribosomal_S15_2 19 95 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01772 Trre-Chr13 14792890 14794326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01772 26 98 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.041 1.24e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01772 K02953 - jre:108987407 130.954