Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01761 ATGGCTTCCACTAACAGCATAATCCAAATGCAAAGCAAAAGTATCAGCAGCAGCAGTAGCCCTTTGAGAAGGAAATACGTTTATGATGTGTTTGTCAGCTTCAGAGGAAAAGACACGCGATGCAATATCACCGATCATCTTTTTGCTGCCCTTGAAAGAAAAGGAATTGTTCCATTTAAGGATGATAAAAATCTCAGGAAAGGTAAATCTATAGGACCCGAGCTCCTTTGTGCTATTGAAGGATCTCAGATTTTCATAGTGGTTTTCTCAAAGAACTATGCTTTCTCAACATGGTGCTTGCGAGAACTGGATCAGATCCTTTATTGTGCTCTAATATCTGGAAGACATGTTCTGCCTATTTTCTATGATGTTGATCCATCTGAGGTAAGACATCAAAAAGGAAGGTATGCTAAAGCCTTTGAAAAACATAAAGAAAGGCTCAAGCATGACTTAGAGGTGGTGAGAAGATGGAGAACAGCTCTGACACGAGTGGCCAATATAACTGGCTGGGATTTACGCCACAAGCGTCAATATGCAGAGATTGAAAAGATTGCTAAACAGATAATGGATTCATTGGGTCCCATGTTTTCAAGCCTTCCAAAAGATCTAGTGGGGTTGACTTCTCCTTTAGAAGAATTAGAAAAACATCTATGTTTGGATTCGGCTAATGATGTTCGGGTTGTAGGAATTTGCGGGATGAAAGGAATAGGGAAATCAACTCTTGCAGCTGTTTTATATGACAGGATTTTTCATGAATTTGAAGCATGCTGTGTTATTGAAGATGTAAGCAAAATTTATAGAGTCGATGGTCCAATTGGTGTACAAAAGCAAATTCTACGTCAAACTCTAAAGGAAGAACGCCTTCGGGTATGCAATCCTTATGAGGCAACTATTTTGATACGAAGTAGGATGCTTCATCTAAAGGCCCTTCTAATTCTTGATAATGTCGATCGAATTGAACAGCTGGAGAAATTAGCCTTGAATCGTGAATGTTTTGGTGCAGGGAGTAAAATCATTATAATATCTAGATATGAGCACATCTTGAACGAGTATGGAGTGGATGGAGTTTGCAAAGTTCCACTCTTGAATCCAATTGACTCTCTTCAATTATTATTCTATCAAAAAGCTTTCAAATGTGCTGATATTAATAGTTATTATGAACAATTGGCATGTGAAATGCTACATTATACAAATGGTCTACCTCTAGCAATTAAAATATTGGGTTCATTTTTGTTTACCCTACATATCTCTCAATGGAAAAATGCACTGGTTAGATTGAGAGAAAGTCCGAACGAAAGTATTATAGATGTCTTGCAATCAAAGTACCAATATCCACTACGACCAACCATGTATCACTACAACGGATGCTGTCGCGATCAAACCAAATGTACTACCATGGAGGTTCACCCTACTAGGGGTGATTATCGTTACATGGAGCAAAGGTACATACAGGGTTATCCGGTGCAACCTTCACGGTTGTCCTACTTGAACCCGTTTGGGCATGAGTTTAACTCTCGTTTACTTATGTTCAATGATGAGAACCCTAATTCTTGTTCCATCATGTGA 1566 0.387 MASTNSIIQMQSKSISSSSSPLRRKYVYDVFVSFRGKDTRCNITDHLFAALERKGIVPFKDDKNLRKGKSIGPELLCAIEGSQIFIVVFSKNYAFSTWCLRELDQILYCALISGRHVLPIFYDVDPSEVRHQKGRYAKAFEKHKERLKHDLEVVRRWRTALTRVANITGWDLRHKRQYAEIEKIAKQIMDSLGPMFSSLPKDLVGLTSPLEELEKHLCLDSANDVRVVGICGMKGIGKSTLAAVLYDRIFHEFEACCVIEDVSKIYRVDGPIGVQKQILRQTLKEERLRVCNPYEATILIRSRMLHLKALLILDNVDRIEQLEKLALNRECFGAGSKIIIISRYEHILNEYGVDGVCKVPLLNPIDSLQLLFYQKAFKCADINSYYEQLACEMLHYTNGLPLAIKILGSFLFTLHISQWKNALVRLRESPNESIIDVLQSKYQYPLRPTMYHYNGCCRDQTKCTTMEVHPTRGDYRYMEQRYIQGYPVQPSRLSYLNPFGHEFNSRLLMFNDENPNSCSIM 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01761 521 PRINTS Disease resistance protein signature 303 317 - -
Trre13g01761 521 PRINTS Disease resistance protein signature 397 411 - -
Trre13g01761 521 PRINTS Disease resistance protein signature 227 242 - -
Trre13g01761 521 Gene3D - 195 354 IPR027417 -
Trre13g01761 521 ProSiteProfiles TIR domain profile. 26 192 IPR000157 GO:0007165
Trre13g01761 521 FunFam Disease resistance protein (TIR-NBS-LRR class) 24 193 - -
Trre13g01761 521 Pfam NB-ARC domain 209 432 IPR002182 GO:0043531
Trre13g01761 521 Pfam TIR domain 28 198 IPR000157 GO:0007165
Trre13g01761 521 Gene3D - 25 194 IPR035897 -
Trre13g01761 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 443 IPR027417 -
Trre13g01761 521 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 170 IPR035897 -
Trre13g01761 521 SMART till_3 27 167 IPR000157 GO:0007165
Trre13g01761 521 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 442 IPR044974 GO:0006952
Trre13g01761 521 Gene3D - 362 444 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01761 Trre-Chr13 14617559 14619379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01761 28 410 WRKY Transcription Factor Family AT4G12020 26.302 1.21e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01761 - - tpra:123888576 868.611