Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01760 ATGAGGAAGAAAAGGAAAGGAAGTGAGACTGATGATACATCTACGGATCTGGGTGATGTTGTTTTGCCTTTGGATCATGTTGGTTCTGTTGGATCATCGATTTTGAAGTCTCATTATTCGTTAGAAGATTATTGTAGGTTGAAGAAAAGGTGTAAAGAAGATGCTAGTGAGCCTGCAAGTTCGTTTAAAAGTAGACTTGCTGGCATTGCTACTGCGCCGCCTTGTGGGACTTCGTCTTTGATTACGTTGACTAGAGGTCTTAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGTAGGAAGAAGAAGATTGATGATGATTATGTTTCTGGTGAATCGATCGGGCAAGGAAAATTTGGATCGGTTTATCTATGTAGGTCTAGGGTTAGTGGAGCGGAATATGCGTGTAAAACTTTGAGGAAGGGAGAGGAGACGGTTCATAGGGAGGTTGAGATAATGCAACATTTGTCTGGACATTCTGGGGTTGTGACACTGCAAGCAGTTTACGAAGAAGCTGAAAGCTTTCATCTTGTAATGGAATTGTGCTCTGGGGGACGACTGATTGATCAAATGGTTAAGGACGGTCCATATTCAGAACAGCGGGCTGCTAACGTATTAAAGGAAGTGATGTTAGTCATCAAGTACTGCCATGACATGGGAGTTGTGCATAGAGATATCAAGCCTGAGAATATTTTGCTCACAAAATCAGGAAAATTAAAGCTTGCAGATTTTGGACTCGCCATGAGAATTTCAGAAGGTCAAAACTTGACTGGATTGGCTGGAAGCCCTGCATATGTTGCCCCGGAAGTATTGTTGGGCAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTATTGGTTGGCTCTCTTCCATTTCAGGGAGATTCATTGGAAGCTGTTTTTGAGGCTATTAAGACTGTCAAGTTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTATTGGGAGAATGCTGACAAGGGATACTTCGGCCAGGATATCAGCCGATGAAGTACTAAGGCATCCATGGATTTTGTTCTACACCGCCCAATCATTAACAATGCTGCCCATCAAAACAAAATTGAAGAATCAAATTGGTGCCACATCTAGACAGGTTGTCGCCACACCAGAACCTAACACAATAAATAATGGCTCGCTTAGCGAGCTTTTATCTTCGGAAAGTTGCAATTCAGATGATCCGGATGAATGTGTGTTGATTGATGCACTTGCCACTGCAATTTCACATGTGAGGATATCTGAACCAAAAAGAACCAGGTTGTGTAGTCCCACTGGCCCCATAATAGTTCAACAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA 1398 0.4249 MRKKRKGSETDDTSTDLGDVVLPLDHVGSVGSSILKSHYSLEDYCRLKKRCKEDASEPASSFKSRLAGIATAPPCGTSSLITLTRGLKRKIGCIDVATQMGRKKKIDDDYVSGESIGQGKFGSVYLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAESFHLVMELCSGGRLIDQMVKDGPYSEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLTRDTSARISADEVLRHPWILFYTAQSLTMLPIKTKLKNQIGATSRQVVATPEPNTINNGSLSELLSSESCNSDDPDECVLIDALATAISHVRISEPKRTRLCSPTGPIIVQQGSSNMKANNLCKAF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01760 465 SMART serkin_6 110 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01760 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Trre13g01760 465 CDD STKc_CAMK 109 357 - -
Trre13g01760 465 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Trre13g01760 465 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 376 - -
Trre13g01760 465 FunFam Serine/threonine-protein kinase PEPKR2 101 419 - -
Trre13g01760 465 Gene3D Transferase(Phosphotransferase) domain 1 101 421 - -
Trre13g01760 465 ProSiteProfiles Protein kinase domain profile. 110 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01760 465 SUPERFAMILY Protein kinase-like (PK-like) 107 391 IPR011009 -
Trre13g01760 465 Pfam Protein kinase domain 110 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01760 Trre-Chr13 14595118 14598644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01760 105 358 EF-hand Containing Proteins AT4G35310 45.076 4.51e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre13g01760 Pkinase 1.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01760 - - gmx:100812729 766.148