Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01759 ATGTCAAGTTTAGAATATTTAGTGAATATTAATATTATAATCTTGTCATGTTTTGTGGCTTTGAATTGCTTTCTTCAAGAGTTTGGATCCAATGCTCAACTCATACCACAAGATGAAGTAAAATCACTACAAGCAATATCAGATAAACTAAAGAACGTGAAATGGAAAGTCACAGAACATTCCTGCATTGATGATGGAGGCTTCAATAATGACAATATTATTGATACAGAGAATGACATTGCGAGGAATGTCACATGCGATTGCAATTTCCAAAATAACACTGTTTGTCATGTTACTAGCATATTTCTAAAGGGCCAAAATATAGCTGGAGTTATGCCTAGTGAATTTGGAAATCTTACTGAATTGAAAGTACTGTCGCTTTCGGGAAACGGATTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTACTAGCTTGGAGGATCTTGTCTTGGAAAATAATGAACTAGGTGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAACTTGAAGAGACTGCTTCTTTCTTCAAATAATTTTGCAGGGACAATACCAGAATCATTTGGCAAACTAAAGAATCTCACTGCTTTTAGTATAGATGGAAGCAGTTTATCGGGACAGATACCTAGTTTTATTGGAAACTGGACCAAACTTGACAGATTGAATATGCAGGGAACATCTATGGAAGGTCCTATTCCCTCCACCATATCTGAGTTGAAACTTTTGACAGAGTTGAGAATATCTGATTTAACAGGATCAACTATGACATTTCCTAGTCTGAAGGATTTGAAAAACTTGCAACTCCTGGAATTGAGAAATTGCTTAATCACAGGTCCTATTCCTGATTACATTGGTGAAATGGAAAGTTTAGTTACTTTAGATCTAAGCTTCAATATGTTGACCGGTTCAATCCCAAATTCAATTCAGGGCTTGAAAAGCCTTGATTACATATTTCTGACGAATAATTCTTTAAGTGGACCGATTCAAGACTGGATACTGAACTTCAAATTTAACATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTAGCTGCCAACAGTTGAATCTGAACTTGGCTTCAAGCCAATCGTCTTCATCGGTCACTTCACCATCAATGTTTTGTTTGAAGAGGAACCTTCCTTGCACAGGAAAACCTCAATATAATTCATTGTTCATAAATTGCGGAGGAGCTCAAGGGGATTATGATGGAAATGACTATTTTGGCGATCTGCAGAAAGATGGCATTTCAAATTTTGTTCTTAGAAATGAAGGACAATGGGCTTATAGCAGCACAGGAGTGTATATGGGAAATGATCACGCAGATTATACGGCATCAAGTACATATAATATTAATGGCTCGGAATACTATAATACCGCCCGACTTTCACCTCTGTCACTTAAATACTATGGCCTTTGTATGGAGAATGGAAATTATAAAGTGAATCTCCATTTCGCTGAGATAATGTTTTCAGACGATAAGACTTTGAGCAGTCTTGGAAGACGCATATTTGACGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGAAAGGGCATCACTAAAGAATTTGTTGTCGAAGTCAACGACAACACGTTGGAAATTCATTTATACTGGGCAGGGAAAGGAACCACTGCTATTCCTGTCGAAGGTGTATATGGACCTCTTATATCTGCTATTACAGTAACACCAAACTTTAAAAATCATTCAAAAGGGTTGTCTGCTGGAGTTATCGTTGGAATTGTTGCTGCATCATGTATGCTTGTCATATTGATACTGATTACCCTTTGGAAGATTGGGTTGCTCGGCAGAAAAGATATACGAGACAAAGACCTTCTTGATCTGAAAACAGGTTATTTCAGCTTAAGACAAATTAAAGCAGCGACTAATAACTTTGACCCTGCAAATAAGATTGGTGAAGGGGGATTTGGACCAGTATACAAGGGTATTCTGTCAAATGGTGATGTCATTGCTGTTAAGCAACTCTCCTCCAAATCAAATCAAGGGAACCGTGAATTTGTTAATGAAATCGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTTAAGCTCTATGGTTGTTGTATTGAAGGAAAGCAGTTGTTGCTGATATATGAATACATGGAAAACAATTGTCTTTCGCGTGCACTTTTTGGTCGTCAAGAACAGAAGCTGCACTTAGATTGGCCTGCAAGAATGAAGATATGTCTTGGCATAGCAAAGGGATTAGCTTATCTTCATGAAGAATCAGCGTTGAAAATAGTACACAGGGACATTAAGGCAAGTAATGTATTGCTTGACAAGGATTTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGATGGGAATACTCATATCAGTACACGGATAGCAGGAACAATTGGATACATGGCTCCAGAATATGCTATGCGAGGTTACTTGACTGATAAGGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCCATACAAATTTCAACCCAATGGAAGAGTTTGTATATCTTCTGGATTGGGCCTATGATCTCCAAGAGCAAGGAAACATTTTGGAGTTAGTGGATCCAAGTCTTCGTGGTTCAAGGTACTCCACAGAGGAAGCCATGAGAATGCTTAGTTTGGCATTCTTATGCACAAACACATCTGCCACTCTTAGGCCATCGATGTCATTGGTAGTGAGCATGCTTGAAGGAAAAACTCCGATCCAAGCGAGAGTAATTAATCGGAGGGAGAGCAGTCGACATGCAAGACTCAACGCCTCCGAGTTGCTGTCACAAGATAGTCAAGCATCAGCAAATGGACCAAGGGTATACTCCTCCGTATCTCTTCAAAGTGAAGGCGATTGTTCTTCAGGCAGTACACTTTGA 2928 0.3842 MSSLEYLVNINIIILSCFVALNCFLQEFGSNAQLIPQDEVKSLQAISDKLKNVKWKVTEHSCIDDGGFNNDNIIDTENDIARNVTCDCNFQNNTVCHVTSIFLKGQNIAGVMPSEFGNLTELKVLSLSGNGLSGPIPTEIGDITSLEDLVLENNELGGPLPPSLGNLSNLKRLLLSSNNFAGTIPESFGKLKNLTAFSIDGSSLSGQIPSFIGNWTKLDRLNMQGTSMEGPIPSTISELKLLTELRISDLTGSTMTFPSLKDLKNLQLLELRNCLITGPIPDYIGEMESLVTLDLSFNMLTGSIPNSIQGLKSLDYIFLTNNSLSGPIQDWILNFKFNIDLSYNNFTKSSATSCQQLNLNLASSQSSSSVTSPSMFCLKRNLPCTGKPQYNSLFINCGGAQGDYDGNDYFGDLQKDGISNFVLRNEGQWAYSSTGVYMGNDHADYTASSTYNINGSEYYNTARLSPLSLKYYGLCMENGNYKVNLHFAEIMFSDDKTLSSLGRRIFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFVVEVNDNTLEIHLYWAGKGTTAIPVEGVYGPLISAITVTPNFKNHSKGLSAGVIVGIVAASCMLVILILITLWKIGLLGRKDIRDKDLLDLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGILSNGDVIAVKQLSSKSNQGNREFVNEIGMISALQHPNLVKLYGCCIEGKQLLLIYEYMENNCLSRALFGRQEQKLHLDWPARMKICLGIAKGLAYLHEESALKIVHRDIKASNVLLDKDLNAKISDFGLAKLDEDGNTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSHTNFNPMEEFVYLLDWAYDLQEQGNILELVDPSLRGSRYSTEEAMRMLSLAFLCTNTSATLRPSMSLVVSMLEGKTPIQARVINRRESSRHARLNASELLSQDSQASANGPRVYSSVSLQSEGDCSSGSTL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01759 975 Gene3D Ribonuclease Inhibitor 78 252 IPR032675 -
Trre13g01759 975 Gene3D Ribonuclease Inhibitor 253 367 IPR032675 -
Trre13g01759 975 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 186 251 - -
Trre13g01759 975 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 252 375 - -
Trre13g01759 975 SUPERFAMILY Protein kinase-like (PK-like) 628 917 IPR011009 -
Trre13g01759 975 FunFam Putative LRR receptor-like serine/threonine-protein kinase 720 928 - -
Trre13g01759 975 SUPERFAMILY L domain-like 94 347 - -
Trre13g01759 975 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 390 577 - -
Trre13g01759 975 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 943 - -
Trre13g01759 975 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515
Trre13g01759 975 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Trre13g01759 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Trre13g01759 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 93 185 - -
Trre13g01759 975 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 615 719 - -
Trre13g01759 975 SMART serkin_6 644 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01759 975 Gene3D - 391 578 - -
Trre13g01759 975 CDD STKc_IRAK 650 918 - -
Trre13g01759 975 Pfam Malectin domain 392 572 IPR021720 -
Trre13g01759 975 Pfam Protein tyrosine and serine/threonine kinase 648 914 IPR001245 GO:0004672|GO:0006468
Trre13g01759 975 ProSiteProfiles Protein kinase domain profile. 644 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01759 975 Gene3D Transferase(Phosphotransferase) domain 1 720 933 - -
Trre13g01759 975 Gene3D Phosphorylase Kinase; domain 1 614 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01759 Trre-Chr13 14564172 14577137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01759 13 962 Receptor kinase-like Gene Family AT1G53440 58.782 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01759 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01759 - - gmx:100815226 1389.79