Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01757 ATGGATGAACAACATCATCATCATCATCATAGTAACTGGGAAACTTCTGAACTTAATAATAATAATTATAATAATCTTAATCATAGTCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTATCTCTCAATCACCTTCTTTTCATCTACCCTTTTCATCTACTTTCAGCCCATCTGATTTTTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTTAACTGGAATAAGAACAGTTTAGGAGAAGAAGAGCAACAAGGTGATAAGAAAGATGACAAAAACTACTCTGATTTCTCTTTTCCTACTCAAACTAAGCCTGAATCTGTTCTTCAATCTTCCTCAGACATGTTTCAACTGCAGGAACAAGCTAAGAAACAAAACATATGGAAATTCAGTGAACCTACAAAGCAAGCCGATTTTTTATCCGAAAGTATGGTGTCAAAATCTGAATTCCAATCAACTCAGAACTTTCCCTCAGAATTGGCACTAGTTAAACCAGAAACACATAATAACTCGGTTAATGGATCTGGTTATTATAATTACAATAACAATAACAACAACGCATCTCAATCCGTTAGAGAACAAAGGAGGTCAGAAGATGGGTATAACTGGAGAAAATACGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTAGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCATCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCAACTTCGTCATGCACTAACTCCGGAATTTCTGATCAATCGGTGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGAGTTCGAGCAAACTTCACAAACAAGTTATTCTGGTGGAGGAAATGATGACGCAAATGCACCGGAAGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCTTCAGCTAGTAGAACCGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCACCTGGTTGTACAGTTAGAAAGCATGTTGAAAGAGCTGCGCATGATATCAAAGCAGTGATCACAACTTACGAAGGGAAACACAACCATGATGTACCAGCTGCACGTGGTGCTGCAGGTTATAACATGAACAGAAATTCTATGAACAACGCCATCGTACCGGCACCTATTAGGCCGTCAGCAGTGAATTGCTATTCTAACTCATCAAGTTTCACAAATTCATTTTATAATAAGACCGGACTGTCTACAAACGGAAATCAAGAGTCATTTCGACCGGACATGTTGCAGGGTCAAGAAAGTTTCGGATATTCATCGGCCAATCATTCACAATACTCAGATGCTGGATACTTAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAAGACTTCTAA 1629 0.3806 MDEQHHHHHHSNWETSELNNNNYNNLNHSLVEFNDVPKFKSVQPPSLPISQSPSFHLPFSSTFSPSDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGDKKDDKNYSDFSFPTQTKPESVLQSSSDMFQLQEQAKKQNIWKFSEPTKQADFLSESMVSKSEFQSTQNFPSELALVKPETHNNSVNGSGYYNYNNNNNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPTSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANAPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCTVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNMNRNSMNNAIVPAPIRPSAVNCYSNSSSFTNSFYNKTGLSTNGNQESFRPDMLQGQESFGYSSANHSQYSDAGYLKAKDERKDDSFLQSFLSKDF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01757 542 Gene3D WRKY domain 204 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 MobiDBLite consensus disorder prediction 194 213 - -
Trre13g01757 542 MobiDBLite consensus disorder prediction 118 134 - -
Trre13g01757 542 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 ProSiteProfiles WRKY domain profile. 214 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 MobiDBLite consensus disorder prediction 101 134 - -
Trre13g01757 542 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 135 460 IPR044810 GO:0003700
Trre13g01757 542 SMART WRKY_cls 219 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 Pfam WRKY DNA -binding domain 220 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 FunFam WRKY transcription factor 206 279 - -
Trre13g01757 542 FunFam WRKY transcription factor 33 365 431 - -
Trre13g01757 542 Gene3D WRKY domain 365 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 MobiDBLite consensus disorder prediction 103 117 - -
Trre13g01757 542 MobiDBLite consensus disorder prediction 274 334 - -
Trre13g01757 542 SUPERFAMILY WRKY DNA-binding domain 215 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01757 542 MobiDBLite consensus disorder prediction 270 362 - -
Trre13g01757 542 MobiDBLite consensus disorder prediction 194 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01757 Trre-Chr13 14544041 14546891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01757 29 538 WRKY Transcription Factor Family AT2G38470 42.832 4.56e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01757 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01757 K13424 - gmx:100776837 692.189