Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01756 ATGGATGAACAACATCATCATCATCATCATAGTAACTGGGAAACTTCTGAACTTAATAATAATAATTATAATAATCTTAATCATAGTCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTATCTCTCAATCACCTTCTTTTCATCTACCCTTTTCATCTACTTTCAGCCCATCTGATTTTTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTTAACTGGAATAAGAACAGTTTAGGAGAAGAAGAGCAACAAGGTGATAAGAAAGATGACAAAAACTACTCTGATTTCTCTTTTCCTACTCAAACTAAGCCTGAATCTGTTCTTCAATCTTCCTCAGACATGTTTCAACTGGAACAAGCTAAGAAACAAAACATATGGAAATTCAGTGAACCTACAAAGCAAGCCGATTTTTTATCCGAAAGTATGGTGTCAAAATCTGAATTCCAATCAACTCAGAACTTTCCCTCAGAATTGGCACTAGTTAAACCAGAAACACATAATAACTCGGTTAATGGATCTGGTTATTATAATTACAATAACAATAACAACAACGCATCTCAATCCGTTAGAGAACAAAGGAGGTCAGAAGATGGGTATAACTGGAGAAAATACGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTAGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCATCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCAACTTCGTCATGCACTAACTCCGGAATTTCTGATCAATCGGTGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGAGTTCGAGCAAACTTCACAAACAAGTTATTCTGGTGGAGGAAATGATGACGCAAATGCACCGGAAGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCTTCAGCTAGTAGAACCGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCACCTGGTTGTACAGTTAGAAAGCATGTTGAAAGAGCTGCGCATGATATCAAAGCAGTGATCACAACTTACGAAGGGAAACACAACCATGATGTACCAGCTGCACGTGGTGCTGCAGGTTATAACATGAACAGAAATTCTATGAACAACGCCATCGTACCGGCACCTATTAGGCCGTCAGCAGTGAATTGCTATTCTAACTCATCAAGTTTCACAAATTCATTTTATAATAAGACCGGACTGTCTACAAACGGAAATCAAGAGTCATTTCGACCGGACATGTTGCAGGGTCAAGAAAGTTTCGGATATTCATCGGCCAATCATTCACAATACTCAGATGCTGGATACTTAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAAGACTTCTAA 1626 0.3801 MDEQHHHHHHSNWETSELNNNNYNNLNHSLVEFNDVPKFKSVQPPSLPISQSPSFHLPFSSTFSPSDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGDKKDDKNYSDFSFPTQTKPESVLQSSSDMFQLEQAKKQNIWKFSEPTKQADFLSESMVSKSEFQSTQNFPSELALVKPETHNNSVNGSGYYNYNNNNNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPTSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANAPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCTVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNMNRNSMNNAIVPAPIRPSAVNCYSNSSSFTNSFYNKTGLSTNGNQESFRPDMLQGQESFGYSSANHSQYSDAGYLKAKDERKDDSFLQSFLSKDF 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01756 541 FunFam WRKY transcription factor 33 364 430 - -
Trre13g01756 541 MobiDBLite consensus disorder prediction 118 132 - -
Trre13g01756 541 MobiDBLite consensus disorder prediction 101 132 - -
Trre13g01756 541 FunFam WRKY transcription factor 205 278 - -
Trre13g01756 541 MobiDBLite consensus disorder prediction 273 333 - -
Trre13g01756 541 MobiDBLite consensus disorder prediction 193 238 - -
Trre13g01756 541 MobiDBLite consensus disorder prediction 269 361 - -
Trre13g01756 541 ProSiteProfiles WRKY domain profile. 213 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 Pfam WRKY DNA -binding domain 219 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 MobiDBLite consensus disorder prediction 193 212 - -
Trre13g01756 541 Gene3D WRKY domain 364 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 SMART WRKY_cls 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 135 456 IPR044810 GO:0003700
Trre13g01756 541 MobiDBLite consensus disorder prediction 103 117 - -
Trre13g01756 541 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 Gene3D WRKY domain 203 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01756 541 SUPERFAMILY WRKY DNA-binding domain 214 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01756 Trre-Chr13 14544041 14546891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01756 204 537 WRKY Transcription Factor Family AT2G38470 51.902 1.37e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01756 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01756 K13424 - gmx:100776837 696.812