Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01755 ATGACCATGGATGAACAACATCATCATCATCATCATAGTAACTGGGAAACTTCTGAACTTAATAATAATAATTATAATAATCTTAATCATAGTCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTATCTCTCAATCACCTTCTTTTCATCTACCCTTTTCATCTACTTTCAGCCCATCTGATTTTTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTTAACTGGAATAAGAACAGTTTAGGAGAAGAAGAGCAACAAGGTGATAAGAAAGATGACAAAAACTACTCTGATTTCTCTTTTCCTACTCAAACTAAGCCTGAATCTGTTCTTCAATCTTCCTCAGACATGTTTCAACTGCAGGAACAAGCTAAGAAACAAAACATATGGAAATTCAGTGAACCTACAAAGCAAGCCGATTTTTTATCCGAAAGTATGGTGTCAAAATCTGAATTCCAATCAACTCAGAACTTTCCCTCAGAATTGGCACTAGTTAAACCAGAAACACATAATAACTCGGTTAATGGATCTGGTTATTATAATTACAATAACAATAACAACAACGCATCTCAATCCGTTAGAGAACAAAGGAGGTCAGAAGATGGGTATAACTGGAGAAAATACGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTAGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCATCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCAACTTCGTCATGCACTAACTCCGGAATTTCTGATCAATCGGTGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGAGTTCGAGCAAACTTCACAAACAAGTTATTCTGGTGGAGGAAATGATGACGCAAATGCACCGGAAGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCTTCAGCTAGTAGAACCGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCACCTGGTTGTACAGTTAGAAAGCATGTTGAAAGAGCTGCGCATGATATCAAAGCAGTGATCACAACTTACGAAGGGAAACACAACCATGATGTACCAGCTGCACGTGGTGCTGCAGGTTATAACATGAACAGAAATTCTATGAACAACGCCATCGTACCGGCACCTATTAGGCCGTCAGCAGTGAATTGCTATTCTAACTCATCAAGTTTCACAAATTCATTTTATAATAAGACCGGACTGTCTACAAACGGAAATCAAGAGTCATTTCGACCGGACATGTTGCAGGGTCAAGAAAGTTTCGGATATTCATCGGCCAATCATTCACAATACTCAGATGCTGGATACTTAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAAGACTTCTAA 1635 0.381 MTMDEQHHHHHHSNWETSELNNNNYNNLNHSLVEFNDVPKFKSVQPPSLPISQSPSFHLPFSSTFSPSDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGDKKDDKNYSDFSFPTQTKPESVLQSSSDMFQLQEQAKKQNIWKFSEPTKQADFLSESMVSKSEFQSTQNFPSELALVKPETHNNSVNGSGYYNYNNNNNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPTSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANAPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCTVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNMNRNSMNNAIVPAPIRPSAVNCYSNSSSFTNSFYNKTGLSTNGNQESFRPDMLQGQESFGYSSANHSQYSDAGYLKAKDERKDDSFLQSFLSKDF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01755 544 SMART WRKY_cls 380 439 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 MobiDBLite consensus disorder prediction 105 119 - -
Trre13g01755 544 SUPERFAMILY WRKY DNA-binding domain 372 440 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 Gene3D WRKY domain 367 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 MobiDBLite consensus disorder prediction 276 336 - -
Trre13g01755 544 FunFam WRKY transcription factor 208 281 - -
Trre13g01755 544 MobiDBLite consensus disorder prediction 272 364 - -
Trre13g01755 544 MobiDBLite consensus disorder prediction 196 241 - -
Trre13g01755 544 FunFam WRKY transcription factor 33 367 433 - -
Trre13g01755 544 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 462 IPR044810 GO:0003700
Trre13g01755 544 MobiDBLite consensus disorder prediction 196 215 - -
Trre13g01755 544 Gene3D WRKY domain 206 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 MobiDBLite consensus disorder prediction 120 136 - -
Trre13g01755 544 ProSiteProfiles WRKY domain profile. 375 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 Pfam WRKY DNA -binding domain 381 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 SUPERFAMILY WRKY DNA-binding domain 217 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01755 544 MobiDBLite consensus disorder prediction 103 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01755 Trre-Chr13 14544041 14546897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01755 31 540 WRKY Transcription Factor Family AT2G38470 42.832 4.91e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01755 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01755 K13424 - gmx:100776837 692.189