Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01754 ATGACCATGGATGAACAACATCATCATCATCATCATAGTAACTGGGAAACTTCTGAACTTAATAATAATAATTATAATAATCTTAATCATAGTCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTATCTCTCAATCACCTTCTTTTCATCTACCCTTTTCATCTACTTTCAGCCCATCTGATTTTTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTTAACTGGAATAAGAACAGTTTAGGAGAAGAAGAGCAACAAGGTGATAAGAAAGATGACAAAAACTACTCTGATTTCTCTTTTCCTACTCAAACTAAGCCTGAATCTGTTCTTCAATCTTCCTCAGACATGTTTCAACTGGAACAAGCTAAGAAACAAAACATATGGAAATTCAGTGAACCTACAAAGCAAGCCGATTTTTTATCCGAAAGTATGGTGTCAAAATCTGAATTCCAATCAACTCAGAACTTTCCCTCAGAATTGGCACTAGTTAAACCAGAAACACATAATAACTCGGTTAATGGATCTGGTTATTATAATTACAATAACAATAACAACAACGCATCTCAATCCGTTAGAGAACAAAGGAGGTCAGAAGATGGGTATAACTGGAGAAAATACGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTAGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCATCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCAACTTCGTCATGCACTAACTCCGGAATTTCTGATCAATCGGTGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGAGTTCGAGCAAACTTCACAAACAAGTTATTCTGGTGGAGGAAATGATGACGCAAATGCACCGGAAGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCTTCAGCTAGTAGAACCGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCACCTGGTTGTACAGTTAGAAAGCATGTTGAAAGAGCTGCGCATGATATCAAAGCAGTGATCACAACTTACGAAGGGAAACACAACCATGATGTACCAGCTGCACGTGGTGCTGCAGGTTATAACATGAACAGAAATTCTATGAACAACGCCATCGTACCGGCACCTATTAGGCCGTCAGCAGTGAATTGCTATTCTAACTCATCAAGTTTCACAAATTCATTTTATAATAAGACCGGACTGTCTACAAACGGAAATCAAGAGTCATTTCGACCGGACATGTTGCAGGGTCAAGAAAGTTTCGGATATTCATCGGCCAATCATTCACAATACTCAGATGCTGGATACTTAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAAGACTTCTAA 1632 0.3805 MTMDEQHHHHHHSNWETSELNNNNYNNLNHSLVEFNDVPKFKSVQPPSLPISQSPSFHLPFSSTFSPSDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGDKKDDKNYSDFSFPTQTKPESVLQSSSDMFQLEQAKKQNIWKFSEPTKQADFLSESMVSKSEFQSTQNFPSELALVKPETHNNSVNGSGYYNYNNNNNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPTSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANAPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCTVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNMNRNSMNNAIVPAPIRPSAVNCYSNSSSFTNSFYNKTGLSTNGNQESFRPDMLQGQESFGYSSANHSQYSDAGYLKAKDERKDDSFLQSFLSKDF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01754 543 MobiDBLite consensus disorder prediction 187 214 - -
Trre13g01754 543 FunFam WRKY transcription factor 33 366 432 - -
Trre13g01754 543 ProSiteProfiles WRKY domain profile. 215 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 MobiDBLite consensus disorder prediction 105 119 - -
Trre13g01754 543 FunFam WRKY transcription factor 207 280 - -
Trre13g01754 543 SMART WRKY_cls 379 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 SMART WRKY_cls 220 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 464 IPR044810 GO:0003700
Trre13g01754 543 Gene3D WRKY domain 366 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 MobiDBLite consensus disorder prediction 120 134 - -
Trre13g01754 543 MobiDBLite consensus disorder prediction 103 134 - -
Trre13g01754 543 Gene3D WRKY domain 205 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 MobiDBLite consensus disorder prediction 275 335 - -
Trre13g01754 543 MobiDBLite consensus disorder prediction 271 363 - -
Trre13g01754 543 ProSiteProfiles WRKY domain profile. 374 439 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 SUPERFAMILY WRKY DNA-binding domain 371 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 SUPERFAMILY WRKY DNA-binding domain 216 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 MobiDBLite consensus disorder prediction 187 240 - -
Trre13g01754 543 Pfam WRKY DNA -binding domain 380 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01754 543 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01754 Trre-Chr13 14544041 14546897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01754 206 539 WRKY Transcription Factor Family AT2G38470 51.902 1.27e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01754 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01754 K13424 - gmx:100776837 696.812