Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01748 ATGGGTGGCTGTTGCAGCCACGATGTTTCTGTTCGAGGCGGCAGAGTTGAAAGTGAGGTTGATGATGGAGATTGTGATTATGATGATTATGAGGATATTAATGATGTCATGTATGAAAATGATGGAGCGATTGTTAGGTTAAGAGGATTTTCTAAGGTTGTGTCAATGTATACCCAACAGGGTAAGAAAGGTGTTAACCAAGATTCAATGACTGTTTGGGAGGACTATACTGGAGAACAAGGCATGATCTTTTGCGGTGTGTTCGATGGTCATGGTCCTCTAGGACACAAAGTTTCGCAATTTATCCGTGACAATCTACCCTCAAAACTATCTGAAGCAATCAAAATGGCACAAGAGAAGGCCAACAAATACTATGATGCCAATGATGCAGATACCGACACTTTCCATGATGCCTACAATGATATTAATCGCCATAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCCTTCGATGAAATGGATGATCATCTTGCTCAGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACGGCCGTAACTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACGAAGGATAGAGATCAACTTATTTCTGTTCAACTTACCGTTGACTTGAAACCGGAACTTCCAAGTGAAGCTTCGAGAATCTTTAACTGTGAAGGTAGGGTTTTCGCTGCAGAAGAAGAACCGGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGCCTAAAAGATTATGGCCTCATTGCATCTCCAGATGTGTTTTATAGAAGAATTACCGAACAAGATGAATTCGTTGTTTTGGCAACTGACGGGATATGGGATGTGCTGACAAACGATGAAGTAGTAAACATAGTTGCTTCAGCGCCAAGAAAGTCAACAGCAGCAAAGTTGCTAGTAAAGCGCGCCGTTAGAGCCTGGAGATACAAGTATCCCGGATCAAAGATCGACGATTGTGCAGCTATATGCTTGTTTCTTGACGATCAACCTGTTCTATCACACTCTCAATCTAATAATATGAGAAGAAGTCGACATCATCGCAGCAAGCACTCAAACAGTAAGCACTCAAGCAGCAAACACTCAAGCAGCAAACACTCAAGATCACATAAGAAAAATGAAGACAATGAAACTGTGGCTGGAAAAGTTGGAATTCAATTGGATGAAGAATGGACAGCACTTGGAGGGTTAGCTAGAGCCAATTCAATATCAAAACTTCCAAGGCTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTAAATGGAAGTTGA 1365 0.4132 MGGCCSHDVSVRGGRVESEVDDGDCDYDDYEDINDVMYENDGAIVRLRGFSKVVSMYTQQGKKGVNQDSMTVWEDYTGEQGMIFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQEKANKYYDANDADTDTFHDAYNDINRHNNISLASWEGCFLKSFDEMDDHLAQEVNTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTKDRDQLISVQLTVDLKPELPSEASRIFNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIASPDVFYRRITEQDEFVVLATDGIWDVLTNDEVVNIVASAPRKSTAAKLLVKRAVRAWRYKYPGSKIDDCAAICLFLDDQPVLSHSQSNNMRRSRHHRSKHSNSKHSSSKHSSSKHSRSHKKNEDNETVAGKVGIQLDEEWTALGGLARANSISKLPRLARNMSKRQSSKHLNGS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01748 454 PANTHER PROTEIN PHOSPHATASE 52 354 IPR015655 GO:0004722|GO:0006470
Trre13g01748 454 MobiDBLite consensus disorder prediction 436 454 - -
Trre13g01748 454 SMART PP2C_4 44 354 IPR001932 -
Trre13g01748 454 MobiDBLite consensus disorder prediction 431 454 - -
Trre13g01748 454 MobiDBLite consensus disorder prediction 369 396 - -
Trre13g01748 454 CDD PP2Cc 53 356 IPR001932 -
Trre13g01748 454 Pfam Protein phosphatase 2C 84 335 IPR001932 -
Trre13g01748 454 SUPERFAMILY PP2C-like 48 358 IPR036457 -
Trre13g01748 454 Gene3D - 49 358 IPR036457 -
Trre13g01748 454 MobiDBLite consensus disorder prediction 364 411 - -
Trre13g01748 454 ProSiteProfiles PPM-type phosphatase domain profile. 53 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01748 Trre-Chr13 14480322 14482619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01748 1 382 PP2C-type Phosphatase Gene Family AT5G01700 50.392 1.12e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01748 - - mtr:11405988 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01748 13 14480322 14482619 Trre13g01748 13 14480322 14482619 ECH
Trre13g01748 13 14480322 14482619 Trre7g00342 7 2198664 2201333 PCT