Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01744 ATGGCAGTCACATTCTATAACCTTAAATCTGAATCTGGTTTGAAGAAGCTTAATGAGTACCTTCTTACTCGCAGTTACATCACTGGTTACCAAGCTTCAAAGGATGATATCACTGTCTATTCAGCTTTGCCATCAGTTCCATCAGCTGAATTTGTTAACGTCGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACGGTGGAATCTTCGCTCGTTGCTGAAGAGGCTGTTGCCACTCCTCCAGCTGCTGACACAAAGGCCACTGAAGCAGAGGATGACGATGATGACGATGTTGATTTGTTTGGTGAAGAGACCGAGGAAGAGAAGAAGGCAGCTGAAGAACGGGCAGCCGCTGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGAAAATCATCTGTTTTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCAGTTGGGTACGGTATCAAGAAACTGCAAATTATGCTTACTATTGTCGATGATTTGGTTTCTGTTGACAATATGGTTGAGGATTATCTTACCGTTGAGCCCATCAATGAGTATGTTCAGAGTTGTGACATTGTAGCCTTCAATAAAATATGTAAGTAG 702 0.433 MAVTFYNLKSESGLKKLNEYLLTRSYITGYQASKDDITVYSALPSVPSAEFVNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEEAVATPPAADTKATEAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01744 233 MobiDBLite consensus disorder prediction 86 110 - -
Trre13g01744 233 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre13g01744 233 FunFam Elongation factor 1-beta 1 like 136 231 - -
Trre13g01744 233 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Trre13g01744 233 SUPERFAMILY GST C-terminal domain-like 8 67 IPR036282 -
Trre13g01744 233 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Trre13g01744 233 Gene3D - 3 79 - -
Trre13g01744 233 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre13g01744 233 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Trre13g01744 233 FunFam Elongation factor 1-delta 1 3 78 - -
Trre13g01744 233 Gene3D - 135 231 IPR014717 -
Trre13g01744 233 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 231 - -
Trre13g01744 233 Coils Coil 114 134 - -
Trre13g01744 233 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01744 Trre-Chr13 14457544 14459243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01744 5 231 Eukaryotic Initiation Factors Gene Family AT2G18110 82.895 2.25e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01744 K03232 - mof:131155160 314.309