Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01730 ATGGGCAAGAAACAGAAGCCACAACAGATTCTTCTTCCGCCGGACCTCCCACCGGAGATTCCTGACGAAGAAGTTGAGTTTTCCGACGACGACGTTAAATTCGTCAACGAAAATCGCGCCTATGCTTCTTTGCTTTCCAACTTGGACACTCAATCAATCAACAAGCAAGTTACACGGGTTGCTGATGCCAAAGAAGATGCTTTGGAGAAACTATATGAGCAACGCAGGCAAAAGACTGCTCTCAAGAAAGAGAAAGAAGAAACAGGTTTGCAGGTTGATCGAGTAGATGCTCTTCCAGTCAAGAGCTTAGATGGCAAAGTCTATTATCGGACAGCTACGAAGACGGCACCGGTAAATGCTCCAAGTGAACAGGAAACCGGAGAGGATGGCAATGAAGACACGGGTTTAGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATTAGAAAAGAAGGAAAAAAACAAGGGAAAGAGGTGGCTAAAGTCGAAGTGGAAGAAGCACCACAGGCAGCAGTTTTGGCTGAGGTTAAAGAAGATCTTAAAGTTGAAGAGGATTTTGAAAGTAAAAAGTGTAAACTTGCAGAGTTTGGAAATGCCTTGCTAACAGACCCAGAGTCCAATATTAAATTTCTGAAGGAAATGGTACAGTTATCTAAAGACAATGATGACACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAGAGATATTATACCTGGCTATCGAATCAGGCTTCCTACTGAAAAGGAACAAGAAATGAAGGTTTCAAAGACCGTTAAAAAGATGCGTTTTTATGAATCAACTCTCCTCTCTGCATACAAGGCTTACTTGCAAAGGCTTATAGCCTTAGAAAAGAAGCCTTTATTTCAGCTTGTCGCAGTTCGTTGTCTTTGTTCTTTGCTTGATTCAAATCCCCATTTCAACTTTCGTGAAACCTTGTTGGATGCGACTGTCAGAAACATAAGCTCCAGTAATGAGGCCATAAGGCAACTTTGCTGTTCCACAATTAAGTCACTCTTTACAAATGAGGGTAAACATGGTGGTGAAGCTACTGTGGAGGCTGTGCGGTTGATTTCTTATAAGGTTAAAGATCATAATTGCCAGTTGCACCCTGATTCCATTGAGGTTTTCTTGTCTCTTTCATTTGATGAGGATCTTGCAAAGGCTGAAAAGATGGCTAAGGATCAGAAATTTATAAATAAGAAAGGTAAGAAAAGAAAAAACACAGAGGCATCAAATCAGTTGCCGGAAAATGACAGAAAGAAAAGTAGGCAAGAGTCAATTTCTAAGACAAGAGAGGAGGTTGAAGCTGAGTACAAGGCTGCTTCCTTTACCAAGGATGCTATGGAGAAGAGACAAATGCAAACACAAACACTCTCTGCTGTGTTTGAGACTTACTTTCGCATTTTGAAGCATACTATGCAGTCCATAGTTGCCAGGCCTGAAGCAAACCCTGGGGTACTTTCAGCTGCAGTTGGAGTGGAACCCCACCCATTGCTGGATCCATGTCTGAAGGGACTGGCAAAATTTTCGCACCTGATTGACCTTGATTTCTTGGGTGATCTAATGAAGCATTTGAAAATACTTGCTTCTGGAGGTAGCAAATCAGACAACACATCTGAGAATTTTCCTAAATGTCTGACCGTATCTGAACGCCTCCAATGTTGCATCGTTGCTTTTAAAGTGATGCGAACCAACCTTGATGCCTTGAATGTTGATTTACAAGACTTCACTGTCCATCTTTACAATCTTGTACTTGAATACAGGCCTGGAAGGGATCAAGGAGAGGTGTTAGCAGAAGCTTTGAAGATTATGTTGTGTGACGATAGGCAGCATGACATGCAAAAAGCTGCTGCGTTTATAAAACGTTTGGCTACATGGTCACTGTGTGTTGGATCTGCAGATTCCATGGCTGCCTTGGTCACGGTAAAGCATCTCCTTCTGAAGAATCTCAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGCTCTGTTTCAGGCACAATTCCGAAATATCTACCATATTCGACAGATCCTAATTTAAGCGGCGCCCTTGCATCGGTACTTTGGGAAATTTGTCTTTTGTCCAAACACTATCATCCAACCATATCCGCAATGGCGACAGGCATTTCAAGCATGAGCACTGAAAACCAAGTCTTCCTCTCCAAGTCCTCTCCTCAACAAGCTTTCAAGGACATGTCTATTGACCAAGAACTATGTTTTGAACAAAGTGGCAGTATTAAATTAAACAACAAGAAGAGACGATTGAATAATGGCAATGCTACATCAAATTCCATTGGTTCCACAACAGTAACGAGTTCATTCAATGAAGATGAGTTGCGAAAGAAATTTAGTTCCCATTTTATGGTTCTTCATGATATCAAGGAGAACGAAAGGTTGAGAAGTAAGTTGGATAAGACTGCAAAATCACTTCAGCTATATGAACAATATAAGAAACAAAAGAAGAAACGATCAAAACCGAGTAGTTGA 2511 0.4134 MGKKQKPQQILLPPDLPPEIPDEEVEFSDDDVKFVNENRAYASLLSNLDTQSINKQVTRVADAKEDALEKLYEQRRQKTALKKEKEETGLQVDRVDALPVKSLDGKVYYRTATKTAPVNAPSEQETGEDGNEDTGLVKLTKAEKRAKLKKIRKEGKKQGKEVAKVEVEEAPQAAVLAEVKEDLKVEEDFESKKCKLAEFGNALLTDPESNIKFLKEMVQLSKDNDDTIVKLGLLSLLAVFRDIIPGYRIRLPTEKEQEMKVSKTVKKMRFYESTLLSAYKAYLQRLIALEKKPLFQLVAVRCLCSLLDSNPHFNFRETLLDATVRNISSSNEAIRQLCCSTIKSLFTNEGKHGGEATVEAVRLISYKVKDHNCQLHPDSIEVFLSLSFDEDLAKAEKMAKDQKFINKKGKKRKNTEASNQLPENDRKKSRQESISKTREEVEAEYKAASFTKDAMEKRQMQTQTLSAVFETYFRILKHTMQSIVARPEANPGVLSAAVGVEPHPLLDPCLKGLAKFSHLIDLDFLGDLMKHLKILASGGSKSDNTSENFPKCLTVSERLQCCIVAFKVMRTNLDALNVDLQDFTVHLYNLVLEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATWSLCVGSADSMAALVTVKHLLLKNLKCRNLLENDTGGGSVSGTIPKYLPYSTDPNLSGALASVLWEICLLSKHYHPTISAMATGISSMSTENQVFLSKSSPQQAFKDMSIDQELCFEQSGSIKLNNKKRRLNNGNATSNSIGSTTVTSSFNEDELRKKFSSHFMVLHDIKENERLRSKLDKTAKSLQLYEQYKKQKKKRSKPSS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01730 836 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g01730 836 MobiDBLite consensus disorder prediction 403 438 - -
Trre13g01730 836 Coils Coil 54 88 - -
Trre13g01730 836 PIRSF Noc3 2 833 IPR016903 -
Trre13g01730 836 Coils Coil 438 458 - -
Trre13g01730 836 SUPERFAMILY ARM repeat 201 639 IPR016024 -
Trre13g01730 836 MobiDBLite consensus disorder prediction 411 438 - -
Trre13g01730 836 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 4 822 IPR016903 -
Trre13g01730 836 Pfam CBF/Mak21 family 559 714 IPR005612 -
Trre13g01730 836 Pfam Nucleolar complex-associated protein 192 282 IPR011501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01730 Trre-Chr13 14345284 14354304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01730 1 811 Core DNA Replication Machinery Family AT1G79150 56.395 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01730 K14834 - gmx:100794797 1191.41