Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01729 ATGAAGATTGATACCGTTACTGGAGAAAAGAAATCGCGCAAAAGACGCAGTGGTGGAAGAAGTGATTCAGTAGAAGACACTCTTGAGAAGTGGAAGAACTACAACAAACAGCAACAACAAAAGCTTGGTTGTGGAGATAATGGAGCAGAAAAGATTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAAAGGATTTGGGGTAAATGGGTTGCCGAGATTCGCGAACCAATCAATGGTAAACATGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAAGCTATGTATGGACCTAGTGCTCGTTTGAATTTTCCTAATGGATCACCATCATCACCATCATCATCATCATCATCAAGTGGTGGATCTGCAGATTCTTTGAATGGTGAGGAGGATCTTGCAAAAGCTGAAGAGTTGGAGGGTAATCTTCATCAGTCTGATGAAGAGAATAAGATTCTTTCTAAGGATTTTGTTGCTGATGACGACTCGGTCGAGGAATCAAAGGAAGTGATGATAGTTGGCACAGTCCAATCTCAAACTAATAAGAAATGTAGGAAAATGGTTCATCAAGGATCTTACAAGAATGTTAGGTCTGAAAAACCTGTGGAAAGTGAACAACTAGAGAGTGAATCAGAGAAGGTTTTGGAAAATTCTGGCATAGGTAGGTGTTATCATGTGCAGAAGGAGCCTATAGATTCAGCCATGAACTCAGGAGCTGTTTGTAGACCTTCTGATATAGCAGAAAATGGGATTCTGGTGAAGAATGAAGAAACAATACGCGGATGGGTGGAGGATTTGAAATCCTTTGAGTTGAGCTGCAACAATAATTTCTTTGGAAACCTGCACAGTATTCTTCCAGATAGCAATCCAAGAACAGATTCTGAGTATTTTAACATAAAAACCGAGGCTTCTCTAGCGAAGAAACATAAGAAGGAAGTATTTGGACATTTCTTAAACCATGCTCAGTCACAAAATGAGCAAAATAAAAATGGAGGTTTTGGTGAGATGAAAAGTGAGCTTAAGGGATTGGAATGCAAGCTGAGAGGCCAATCTATTGATTGTAAGAGTGATGAAGTTCAAATAGTACCTTACATGCAGGGAATTCATCTGTCTGATGGTGGCAGTGTTGGAACAATTGAAAGGATGTCCCAAGTTGAAGCTTTGAACAACAATACTAATAAAAACACTAAATTAAAAGAGAGAGGAAATAATGGAACACTGCATGGATTTGGTTCAGGGCAAAGTAGGAAGCTGAGTGATCTTTCTCAGCAGCTGCAAAGATTGGGTGGTTACTTGCCTGAAAATTGGAATAATATGCAGTTTACAGATCTTGAAGTTGGTTATGACTATAGTTTCTTAAAACCTGATTATGATTTTGGTTTATTAGAAGAGAAGAAGTTACTAGATATATGTTTTTCACATATAAGATCTTGA 1539 0.3886 MKIDTVTGEKKSRKRRSGGRSDSVEDTLEKWKNYNKQQQQKLGCGDNGAEKIHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDKAAKAMYGPSARLNFPNGSPSSPSSSSSSSGGSADSLNGEEDLAKAEELEGNLHQSDEENKILSKDFVADDDSVEESKEVMIVGTVQSQTNKKCRKMVHQGSYKNVRSEKPVESEQLESESEKVLENSGIGRCYHVQKEPIDSAMNSGAVCRPSDIAENGILVKNEETIRGWVEDLKSFELSCNNNFFGNLHSILPDSNPRTDSEYFNIKTEASLAKKHKKEVFGHFLNHAQSQNEQNKNGGFGEMKSELKGLECKLRGQSIDCKSDEVQIVPYMQGIHLSDGGSVGTIERMSQVEALNNNTNKNTKLKERGNNGTLHGFGSGQSRKLSDLSQQLQRLGGYLPENWNNMQFTDLEVGYDYSFLKPDYDFGLLEEKKLLDICFSHIRS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01729 512 MobiDBLite consensus disorder prediction 139 161 - -
Trre13g01729 512 MobiDBLite consensus disorder prediction 223 247 - -
Trre13g01729 512 MobiDBLite consensus disorder prediction 139 163 - -
Trre13g01729 512 MobiDBLite consensus disorder prediction 1 32 - -
Trre13g01729 512 SUPERFAMILY DNA-binding domain 77 141 IPR016177 GO:0003677
Trre13g01729 512 Coils Coil 171 191 - -
Trre13g01729 512 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Trre13g01729 512 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Trre13g01729 512 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 306 - -
Trre13g01729 512 MobiDBLite consensus disorder prediction 227 247 - -
Trre13g01729 512 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Trre13g01729 512 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Trre13g01729 512 FunFam Ethylene-responsive transcription factor 2 76 142 - -
Trre13g01729 512 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Trre13g01729 512 MobiDBLite consensus disorder prediction 1 77 - -
Trre13g01729 512 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Trre13g01729 512 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01729 Trre-Chr13 14338145 14340272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01729 13 173 AP2-EREBP Transcription Factor Family AT2G40340 52.147 5.60e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g01729 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01729 - - tpra:123891882 902.508