Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01725 ATGCTTGTTACTATTTTCTTCATCTTTCTGTCCTGTTTCCATCCCGTCGTTTCTCTCACCTCCAACGGTCTCGCTCTTCTAACACTCAAATCCGCCGTCGACGGCAACGGCGCAACCGCATTCTCCGACTGGAACGAAGACGACATTACGCCGTGTCACTGGTCCGGCATTAGCTGTTCTAACATCTCCGGCGAGTCAGATTCTCGTGTCGTCGGTATCGCTCTTGCGGCAAAAGGCCTCCGTGGTTACCTCCCGTCGGAGCTCGGAAAATTAATCTATCTCCGTCGTCTGAGTCTTCATACTAATCTCTTCCACGGTTCTATTCCTGTTCAGCTTTTCAATGCCACCTCTCTCCACAGTATCTTCCTCCACGGTAACAACCTCTCCGGCAACATTTCCCCCTCCATTTGTAACCTTCCACGCCTGCAAAACCTTGACCTCTCCGAAAATTCACTCGCCGGAGCTATCCCGGAGTCTCTCGGAAACTGTTCCCAGCTTCAGCGACTCATTCTCGCGAGAAATAATTTTTCCGGCGATATCCCGGCGACTCCATGGCCGAAGCTGAAAAACCTCGTTCAGCTCGATCTTTCCGCGAATCTTCTAGAAGGTTCGATTCCAGACCAAATCGGCGATCTCAATTCCCTCACCGGAACCCTAAACCTTTCATTCAATCACCTGTCTGGTAAAGTTCCAAAATCTTTAGGAAAATTGCCGGTGACGGTTAGCTTCGATCTTCGAAACAACGATCTAAGCGGTGAAATTCCTCAAACCGGGTCGTTTTCGAATCAGGGACCCACCGCGTTTCTCAATAACCCGAAACTATGTGGGTTTCCTCTTCAAAAACAGTGCACCGGTTCAGCGCCGAGTGAACCAGGAACTAGTCCTGGTTTAACTCGACCGCACGTGAACCGGTCTAAGAAAGGGTTGAGTCCCGGTTTAATTATTATTATAACTGTGGCTGATGCTGCTGTTGTGGCATTGATTGGGCTTGTTGTTGTGTATGTGTATTGGAAGAAGAAAGATAACTCTAATGGGTGTAGTTGTACTTTGAAGAGGAAATTTGGTGGTAGTGGAAACAATGAGAGATCAAATTTGTGTTGTTTTTGTTCGTCATTAGGGTGTGTTAAAGGGTTTAAGAGTGATGATTCTGAGATGGAAGAGAGTGAGAAAGGAGGAGGAGGAGGTGGCGGCGGCGGTGGTGGTGGTGGGAGAGGGGAAAGTGAAGGAGAAGGTGAATTGGTGGCAATTGATAAAGGTTTTAGCTTTGAACTTGATGAGTTGTTAAGAGCTTCTGCATATGTATTAGGGAAAAGTGGGTTAGGGATTGTGTATAAGGTTGTGCTTGGGAATGGTGTACCTGTGGCTGTGAGGAGATTAGGGGAAGGTGGTGAACAAAGGTATAAGGAATTTGCTGCTGAAGTTCAAGCTATTGGGAAAGTGAAACATCCTAATATTGTGAAATTAAGAGCTTATTATTGGGCTCATGATGAAAAACTTTTGATTAGTGATTTCATCTCCAATGGCAATTTGGCTAATGCTCTTAGAGGAAGAAATGGTCAACCATCTCCAAATCTTTCATGGTCAACTAGGCTGAAAATAGCCAAAGGAACAGCCAGGGGTTTAGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTCCACGGCGACCTCAAACCCTCCAATATCCTCCTTGACACAGACTTTCAACCTCTCATTTCTGATTTTGGTCTTAACCGGCTGATCAGCATCACTGGAAACAATCCCTCCACCGGCGGTTTTATGGGTGGTGCTCTTCCTTACTTGAAGTCATCACAAACTGAACGAATCAACAACTATAAAGCACCGGAAGCTAAAGTACCAGGCTGCAGGCCCACCCAAAAATGGGATGTGTATTCATTTGGTGTTGTATTACTTGAATTGCTCACTGGTAAGTCCCCCGATTCTTCTCCAGGAGCATCAACTTCTGTGGAAGTACCTGACTTGGTTAGGTGGGTAAAGAAAGGGTTTGAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTTCTTCAAGAAATCCATGCCAAGAAAGAAGTACTAGCTGTGTTCCATGTAGCACTATCATGCACCGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAACCGTCTCTGATAATCTTGAAAGAATTTGA 2175 0.4589 MLVTIFFIFLSCFHPVVSLTSNGLALLTLKSAVDGNGATAFSDWNEDDITPCHWSGISCSNISGESDSRVVGIALAAKGLRGYLPSELGKLIYLRRLSLHTNLFHGSIPVQLFNATSLHSIFLHGNNLSGNISPSICNLPRLQNLDLSENSLAGAIPESLGNCSQLQRLILARNNFSGDIPATPWPKLKNLVQLDLSANLLEGSIPDQIGDLNSLTGTLNLSFNHLSGKVPKSLGKLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPKLCGFPLQKQCTGSAPSEPGTSPGLTRPHVNRSKKGLSPGLIIIITVADAAVVALIGLVVVYVYWKKKDNSNGCSCTLKRKFGGSGNNERSNLCCFCSSLGCVKGFKSDDSEMEESEKGGGGGGGGGGGGGRGESEGEGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSPNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDLKPSNILLDTDFQPLISDFGLNRLISITGNNPSTGGFMGGALPYLKSSQTERINNYKAPEAKVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSVEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSDNLERI 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01725 724 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Trre13g01725 724 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Trre13g01725 724 SUPERFAMILY L domain-like 25 280 - -
Trre13g01725 724 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Trre13g01725 724 FunFam Leucine-rich repeat receptor-like protein kinase 190 285 - -
Trre13g01725 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Trre13g01725 724 Pfam Protein kinase domain 434 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01725 724 SMART serkin_6 433 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01725 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 164 724 IPR046959 -
Trre13g01725 724 SUPERFAMILY Protein kinase-like (PK-like) 434 721 IPR011009 -
Trre13g01725 724 PRINTS Leucine-rich repeat signature 142 155 - -
Trre13g01725 724 PRINTS Leucine-rich repeat signature 188 201 - -
Trre13g01725 724 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 19 185 - -
Trre13g01725 724 Gene3D Phosphorylase Kinase; domain 1 412 504 - -
Trre13g01725 724 CDD STKc_IRAK 435 724 - -
Trre13g01725 724 MobiDBLite consensus disorder prediction 385 408 - -
Trre13g01725 724 FunFam Leucine-rich repeat receptor-like protein kinase 412 504 - -
Trre13g01725 724 ProSiteProfiles Protein kinase domain profile. 429 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01725 724 Gene3D Transferase(Phosphotransferase) domain 1 505 724 - -
Trre13g01725 724 FunFam Os07g0541700 protein 512 595 - -
Trre13g01725 724 SMART LRR_typ_2 139 163 IPR003591 -
Trre13g01725 724 SMART LRR_typ_2 91 115 IPR003591 -
Trre13g01725 724 SMART LRR_typ_2 188 212 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01725 Trre-Chr13 14290630 14295097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01725 15 724 Receptor kinase-like Gene Family AT1G67510 69.697 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre13g01725 Pkinase 3.6e-31 CL0016
TF S1Fa-like Trre13g01725 Pkinase 3.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01725 - - gmx:100795021 1130.55