Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01706 ATGAATCAGCCAGAGATTCTTCACTCTCCATGGCCATTAACCTATGCACAAATAGACTCATCAACTTTTCATCATCATCATCATCATCATCAAACCATGGCACATCTTGGTCACTATGATCCATATGGCATCATCATGGATGTCCATGTTGATGATTGTAATCCATATGGCATCATCATGGATGATGACCATTTTGATGTTGACTATGTTCCATATGGCATCATCATGGATGACCATGTTGATGATTATGAATTCAATAGTCTACTAAGCACTTCAGAGAAAAGTACTCTCTCTGAAATCTCTATGTTCACCAATGATCATATTCAATTTCCAATTGATGAATCAGAAACCTTGGAACTTTCATCACTCATGGAATTGGAATCTTTTGATTCAATTTCATGTTCTCAAATTGTTGATATTCATGAATATGAATACCAAGAAGAAAGTGAAGGGAGCTTCCCTTCACAAAATTTTCCCTGTAACCTCGAGGAACAAAGTTCAAATCCCATTAGAGACAGTTGCGAAATGAACACCGGTACTACTAATGATAATTTCCCTTCACAAAATTTCCAATATGATTCATGGAGTCCAACACAATCAATAAAATCAGATTTTTCCTCAATTCAACAATCACTTATTCTTCCACAAGAAAACATGGAAATTGAAAATCAAGTGAGTCTTCCACACTTGATGGAAGCACATGGAGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTTACTCCAATGGGTGATTCTCTTGAGACACTTGCATTTTATTTGTCTCAAGAAGTTACAAATCATGGTGAATATCTAAAAGGCGAGGCTGAAAAGAACTTCGATTCTTCTTTCAAGGCACTCTATCAAGGGAATTTAGTTGGAAAAGTTGCTCATTTTGCAGCTATTTCAACAATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAAATTCACATAATAGATTTTTGTATTGGAAATGGTGTTCAATGGCCTTCTTTATTAGAGGCTGTTTCAAAAATGAACAAAAGATTGAAATTGACATCAATTAAATGGAGTGATGAAAATTCTGATCAATGTGTTTGGAATTTTGAGGATACCAAAAGGGAACTTTGTGAGTATGCTAAATCATGTGGTTTGAAATTGATGGTAGAAGAAAAGGGATTGGAGGAATTGGTTAGTGAGATCAAATTAATGAAGAAAAGGGGTGTGAGGAAAGTGTTTTTAGCCTTTAATTTGATGATTGGTCTACCTCATATGGGAATGGTAAGAAACAGAAGGAAAAATGCTATGGAATTTTTGAAAGTAGCTAAGGATTTGATCAAGAATTGTGGAAACAAGGGAATGATTACTTTTGGTGATGGTGATGTATTTGAGAAACTGAAAAACAGTTTGAACTTTAAGTCATTTTTTGAAGGGAATTTGGTTCATTATAAGGCTTTGTTGGAATCAATTGAATCACAATTTTCAGCTCAATTCTTAGAGGCAAGAATTGCATGTGGGGTGTTGTTTGTGGCACCTTGTATATCTTCTTGTGATTGGTTAAAAACATGGGAAGAGATGAAAATTGATGGTGATTTTCAGATTGAGATTAGCTTAGAAAGTGGAAGTTTAAGCAAAAATGTTTTGATGGAAGTCAAAGAAGGGTTGAGAGGGTGTGAAAGTTCTTATCAGGCTAGAATTGAAGGTGGAAATGAGAATGAACTTGTTTTGGAATGGAAAGGAACTCAATTATTAAGATTTTCCATATGGAAAAACTAA 1788 0.3484 MNQPEILHSPWPLTYAQIDSSTFHHHHHHHQTMAHLGHYDPYGIIMDVHVDDCNPYGIIMDDDHFDVDYVPYGIIMDDHVDDYEFNSLLSTSEKSTLSEISMFTNDHIQFPIDESETLELSSLMELESFDSISCSQIVDIHEYEYQEESEGSFPSQNFPCNLEEQSSNPIRDSCEMNTGTTNDNFPSQNFQYDSWSPTQSIKSDFSSIQQSLILPQENMEIENQVSLPHLMEAHGEALEKGQKALAEVNLKCISQKVTPMGDSLETLAFYLSQEVTNHGEYLKGEAEKNFDSSFKALYQGNLVGKVAHFAAISTILEAAMLEDCDEIHIIDFCIGNGVQWPSLLEAVSKMNKRLKLTSIKWSDENSDQCVWNFEDTKRELCEYAKSCGLKLMVEEKGLEELVSEIKLMKKRGVRKVFLAFNLMIGLPHMGMVRNRRKNAMEFLKVAKDLIKNCGNKGMITFGDGDVFEKLKNSLNFKSFFEGNLVHYKALLESIESQFSAQFLEARIACGVLFVAPCISSCDWLKTWEEMKIDGDFQIEISLESGSLSKNVLMEVKEGLRGCESSYQARIEGGNENELVLEWKGTQLLRFSIWKN 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01706 595 ProSiteProfiles GRAS family profile. 218 594 IPR005202 -
Trre13g01706 595 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 203 527 IPR005202 -
Trre13g01706 595 Pfam GRAS domain family 233 594 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01706 Trre-Chr13 14073999 14075786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01706 246 498 GRAS Transcription Factor Family AT5G66770 26.316 9.49e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g01706 GRAS 3.2e-26 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01706 - - tpra:123890000 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01706 13 14073999 14075786 Trre13g01706 13 14073999 14075786 ECH