Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01703 ATGCAGCACAACATCCTGACCTCGATCCGTAGCACGAAAATCACGGATGGTTGTAAAGGCACTCAAGTCTACGCTCTTAACTCCTCCGTCGGCGCCGATTCTCCGATCAACGCCGGCGGTGGAGAAACCATCGGAGATAAACTATTTCATCATTTACTAAACCGGTCTAAACCATCCGGTCGAATCAAACCGGTTGGTACAAAAACGGCTCCACGCGACCTCGTTTTTGAGAGTCTCCTCCCTTATGGCCTTCCTTCGTCGGAGCTTCTAGAACCTTCGATCGAGCCTTGCTTGAAGCCTATTGATTTGGTTGAAACCCTCTCCGGCGTGCATCGCCGGATCGTGAGTTCCGGCGAGGATGGGAAATTTGAGGCGTTTTTGGAGCAGTGTTCGGTGTTTAAGGGATTTCCTGATACTAAATTGTTCCGGCGGAGTCTCCGGTTGGCGCGGCATCATGCAGTGGATGTGCACTCGAAGGTTGTGTTGGCTTCGTGGTTGAGGTATGAGAGGAGAGAGGATGAATTTGTTGGATCTTCAGCAATGGATTGTTGTGGAAGAAACCTTGAATGCCCTAAAGCTAGTTTGGTTACAGGGTATGATCCTGAATCTGGTTTTGATCATTGTTCGTGTTTTCGAAAAGATAATAATAATATTATTGCTGACAATGATGATGGGGAATTTGAATGTTCAACATCTTATCGAGATGAGGATGATGATAGTGGTAGTGGTGATGGTGGTTACCATGATATATCTTTTTGTATAGGTGATAGTGATATTAGGTGTAATAGATACTCTATGGCCTCGCTTTCGAGGCCTTTTATGGTAATGTTATATGGTGAATTTGTTGAGTCTAGGAGGGAGAAGATAAATTTCTCCCTAAATGGTGTATCTGTTGATGTGATGATGGCTGTTGAGATTTTTAGTAGAACTAAGAGGTTGAGTCTATTTGCAAATAATGTTGTTGTAGAGATGCTTTCTTTTGCGAATAGGTTTTGTTGTGAGGAGATGAAATCTGCTTGTGATGCTCATTTGGCTTCTTTGGTATTCGACATGGATGATGCATTGTTGTTGATTGAGTATGGACTGGAGGAGACTGCGTATCTGCTCGTGGCGGCTTGCTTGCAGGTGTTTCTGAGAGAGCTCCCTAGTTCATTGCACAGTTTGAGTGTTTCGAAATTGTTTTGTAGTGTAGAGGGTAGAGATAGATTGGCTTTGGTAGGGCATGTTTCGTTTTCATTGTATTGTTTTTTGAGTCAGGTTTCGACGGAGGAAGATATGAAATCCAACACGACTGTGATGCTCTTAGAGAGGTTAGGAGAGTGTGCGGCGAGTGGTTGGCAGAAGCAACTTGCTTATCACCAATTAGGTGTTGTGATGCTTGAGAGAAAAGAATACAAAGATGCACAACAGTGGTTTGAGGCTGCTGTTAAGGAAGGACATATTTATTCTTCAGTGGGTGTTGCAAGGGCCAAATATAAACGTGGCCACACATATTCAGCATACAAGATGATAAACTCCCTTATTTCTGATCATAAACCTGTTGGTTGGATGTATCAGGAAAGGGCTTTATATTGCATTGGGAAGGAAAAAATGATGGACTTGGTCTCTGCAACTGAATTAGATCCAACTCTTTCATTTCCATACAAACACCGAGCTGTTTTTTTGGTGGAGGAGAGTAAGATTGAAGCTGCCATTTCTGAAATTAATAAAATAATTGGTTTCAAGATTTCTACTGACTGCCTTGAACTGAGAGCTTGGTTCTTGATTGCCATGAAGGATTATGAAGGAGCCCTTAGGGATGTCAGGGCAATTTTGACATTGGATCCAAATTATAAGATGTTCTATGGGAAAATGCAAGGCGATCGCTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAACCAGGCCGATTGCTGGATGCAATTGTATGACAATTGGTCTTCCGTTGACGATATTGGTTCTTTGGCTGTTGTACACCAGATGTTGGAGAATAACCCGGGGAAAAGCATTTTACGCTTTCGGCAATCTCTACTCCTTTTAAGGTTAAATTGTCAAAAGGTAGCCATGCGTAGTTTACGTCTGGCTAGAAATCATTCTTCTTCAGCACATGAAAGACTTATCTATGAAGGATGGATATTGTATGACACTGGTCATCGCGAAGAAGCTATAGCAAAGGCCGACGAGTCAATTTCTATTCAAAGGTCATTTGAAGCTTTCTTTCTCAAGGCTTATGCATTAGCTGACTCATGTCTTGATTCCGAGTCTTCAAAGAATGTGATTGATCTCTTGGAGGAAGCTCTTAGATGCCCTTCAGATGGTCTTCGGAAGGGACAAGCACTAAATAATTTAGGGAGTATATATGTTGATTGTGAAAAGCTAGACCTTGCTGCTGACTGCTACAAGCATGCACTTAACATCAAGCATACACGAGCACATCAGGGGTTGGCACGTGTATACCATCTTCAGAATCAGCCTAAAGCGGCATATGATGAGATGACAAAGCTAATAGAAAAGGCCAAGAATAATGCATCTGCTTATGAGAAGCGGTCAGAATATTGTGATCGTGACATGGCAAAGGGAGATCTTAGTTTGGCAACACAGTTGGATCCTCTAAGGACATATCCGTATAGATATAGGGCGGCAGTTTTAATGGACGATCATAAGGAAACTGAAGCAATCGCAGAGCTTTCAAGGGCCATTAACTTCAAGCCAGAACTGCAACTGTTACATCTTCGAGCGGCATTTTATGATTCAATGGGTGATTTTGTTTCTACTGTCAGAGACTGTGAAGCTGCCCTTTGTCTTGATCCTAGCCATGCTGAGATGTTAGAGCTTTGTAATAAAGCCCGGGAGCAAGTTACTGATGCAAAGTGA 2877 0.4293 MQHNILTSIRSTKITDGCKGTQVYALNSSVGADSPINAGGGETIGDKLFHHLLNRSKPSGRIKPVGTKTAPRDLVFESLLPYGLPSSELLEPSIEPCLKPIDLVETLSGVHRRIVSSGEDGKFEAFLEQCSVFKGFPDTKLFRRSLRLARHHAVDVHSKVVLASWLRYERREDEFVGSSAMDCCGRNLECPKASLVTGYDPESGFDHCSCFRKDNNNIIADNDDGEFECSTSYRDEDDDSGSGDGGYHDISFCIGDSDIRCNRYSMASLSRPFMVMLYGEFVESRREKINFSLNGVSVDVMMAVEIFSRTKRLSLFANNVVVEMLSFANRFCCEEMKSACDAHLASLVFDMDDALLLIEYGLEETAYLLVAACLQVFLRELPSSLHSLSVSKLFCSVEGRDRLALVGHVSFSLYCFLSQVSTEEDMKSNTTVMLLERLGECAASGWQKQLAYHQLGVVMLERKEYKDAQQWFEAAVKEGHIYSSVGVARAKYKRGHTYSAYKMINSLISDHKPVGWMYQERALYCIGKEKMMDLVSATELDPTLSFPYKHRAVFLVEESKIEAAISEINKIIGFKISTDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYKMFYGKMQGDRLVELLRPVAQQWNQADCWMQLYDNWSSVDDIGSLAVVHQMLENNPGKSILRFRQSLLLLRLNCQKVAMRSLRLARNHSSSAHERLIYEGWILYDTGHREEAIAKADESISIQRSFEAFFLKAYALADSCLDSESSKNVIDLLEEALRCPSDGLRKGQALNNLGSIYVDCEKLDLAADCYKHALNIKHTRAHQGLARVYHLQNQPKAAYDEMTKLIEKAKNNASAYEKRSEYCDRDMAKGDLSLATQLDPLRTYPYRYRAAVLMDDHKETEAIAELSRAINFKPELQLLHLRAAFYDSMGDFVSTVRDCEAALCLDPSHAEMLELCNKAREQVTDAK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01703 958 SUPERFAMILY POZ domain 245 345 IPR011333 -
Trre13g01703 958 Pfam Tetratricopeptide repeat 779 807 IPR019734 GO:0005515
Trre13g01703 958 PANTHER ETO1-RELATED 7 955 IPR044631 GO:0010105
Trre13g01703 958 SUPERFAMILY TPR-like 450 808 IPR011990 GO:0005515
Trre13g01703 958 Gene3D Tetratricopeptide repeat domain 672 840 IPR011990 GO:0005515
Trre13g01703 958 Gene3D Potassium Channel Kv1.1; Chain A 242 387 IPR011333 -
Trre13g01703 958 SMART BTB_4 248 348 IPR000210 GO:0005515
Trre13g01703 958 Gene3D Tetratricopeptide repeat domain 854 958 IPR011990 GO:0005515
Trre13g01703 958 SUPERFAMILY TPR-like 761 946 IPR011990 GO:0005515
Trre13g01703 958 Coils Coil 830 850 - -
Trre13g01703 958 ProSiteProfiles TPR repeat profile. 778 811 IPR019734 GO:0005515
Trre13g01703 958 Gene3D Tetratricopeptide repeat domain 435 617 IPR011990 GO:0005515
Trre13g01703 958 SMART tpr_5 578 611 IPR019734 GO:0005515
Trre13g01703 958 SMART tpr_5 778 811 IPR019734 GO:0005515
Trre13g01703 958 SMART tpr_5 907 940 IPR019734 GO:0005515
Trre13g01703 958 SMART tpr_5 704 737 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01703 Trre-Chr13 14059704 14065495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01703 779 942 Glycosyltransferase AT3G04240 29.714 6.70e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01703 - - pvu:PHAVU_008G094700g 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01703 13 14059704 14065495 Trre13g01703 13 14059704 14065495 ECH
Trre13g01703 13 14059704 14065495 Trre7g00378 7 2414888 2419431 PCT