Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01701 ATGAAGGAGGAAGAAATATGTGGCTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAACATGGTTGTGAAATTAGTGAAGAAGCAAATGAAGATGAAGAAAGTAAGCAAAATAATAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAGAAGAAACCATCAGTGAGACCATATGTTAGATCCAAGTTTCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTATTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTGAGTATTGCTCATGTGAAGAGTCATTTGCAGATGTATAGAAGCAAAAAAGTAGTTGACACAAATCAAGTCTTGGGTGATCATAGGCTTCTTGTAGACAATGGAGACAAAAATGTTTACAATCTCACACAACTTCCTATGCTTCAAGGCTATACTCCAAACCAAACTTCATCAAATAGATGTGGATATGGAGAGGCTTCTATTGCCATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAGAATGATTGAGAGAACCAATAATAACAACATCAATATGCAAGCTCATAATATTTTCCAAGTGGATGATGCATCAACTTTTAGAGAATTATCATCAACAAGTAAAGTCCAAGAACCAAAAAATAATTTCGTCTCATTTTGTGGCAATGAATCTTTTAAATTAAGCAAGAAGGATGATCTTCAAGTACAGCCTAGAGAACAAGAGCTCATGCCAAATGATAATCAAGTGGACTTAAAGACATTGAAAAGAAAAGCTTCAAATTTGGACCTTGATTTGGATCTATCACTTAAATTAAATTCAAGGATCATTGATCATGAGAACCAAGGAAGTATAGAGGATCATCATGAAGTTGGAAGCAATTTATCTCTCTCATTGTATTCTCAATCCTCTTATAATCTTTGCAAAAGAAACAAAGAAGGACAAGATGATTCTAAGGAGCAAGAGAAAAGAGTCAATATAGGTTTGGATCTAACCATATGA 1068 0.3427 MKEEEICGSICSKTSVSINEHGCEISEEANEDEESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAIQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLGDHRLLVDNGDKNVYNLTQLPMLQGYTPNQTSSNRCGYGEASIAMYENMVHMSSINESRADFYGRMIERTNNNNINMQAHNIFQVDDASTFRELSSTSKVQEPKNNFVSFCGNESFKLSKKDDLQVQPREQELMPNDNQVDLKTLKRKASNLDLDLDLSLKLNSRIIDHENQGSIEDHHEVGSNLSLSLYSQSSYNLCKRNKEGQDDSKEQEKRVNIGLDLTI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01701 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 69 124 IPR006447 GO:0003677
Trre13g01701 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 49 222 IPR046955 GO:0003700
Trre13g01701 355 MobiDBLite consensus disorder prediction 36 53 - -
Trre13g01701 355 MobiDBLite consensus disorder prediction 25 61 - -
Trre13g01701 355 SUPERFAMILY Homeodomain-like 69 123 IPR009057 -
Trre13g01701 355 Coils Coil 355 355 - -
Trre13g01701 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 125 IPR017930 -
Trre13g01701 355 Pfam Myb-like DNA-binding domain 71 121 IPR001005 -
Trre13g01701 355 Gene3D - 69 125 - -
Trre13g01701 355 FunFam Myb family transcription factor 67 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01701 Trre-Chr13 14042858 14044931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01701 60 125 G2-like Transcription Factor Family AT2G42660 77.273 9.59e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g01701 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01701 - - gmx:102662997 384.415