Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01700 ATGAATATGAAGGAGGAAGAAATATGTGGCTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAACATGGTTGTGAAATTAGTGAAGAAGCAAATGAAGATGAAGAAAGTAAGCAAAATAATAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAGAAGAAACCATCAGTGAGACCATATGTTAGATCCAAGTTTCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTATTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTGAGTATTGCTCATGTGAAGAGTCATTTGCAGATGTATAGAAGCAAAAAAGTAGTTGACACAAATCAAGTCTTGGGTGATCATAGGCTTCTTGTAGACAATGGAGACAAAAATGTTTACAATCTCACACAACTTCCTATGCTTCAAGGCTATACTCCAAACCAAACTTCATCAAATAGATGTGGATATGGAGAGGCTTCTATTGCCATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAGAATGATTGAGAGAACCAATAATAACAACATCAATATGCAAGCTCATAATATTTTCCAAGTGGATGATGCATCAACTTTTAGAGAATTATCATCAACAAGTAAAGTCCAAGAACCAAAAAATAATTTCGTCTCATTTTGTGGCAATGAATCTTTTAAATTAAGCAAGAAGGATGATCTTCAAGTACAGCCTAGAGAACAAGAGCTCATGCCAAATGATAATCAAGTGGACTTAAAGACATTGAAAAGAAAAGCTTCAAATTTGGACCTTGATTTGGATCTATCACTTAAATTAAATTCAAGGATCATTGATCATGAGAACCAAGGAAGTATAGAGGATCATCATGAAGTTGGAAGCAATTTATCTCTCTCATTGTATTCTCAATCCTCTTATAATCTTTGCAAAAGAAACAAAGAAGGACAAGATGATTCTAAGGAGCAAGAGAAAAGAGTCAATATAGGTTTGGATCTAACCATATGA 1074 0.3417 MNMKEEEICGSICSKTSVSINEHGCEISEEANEDEESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAIQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLGDHRLLVDNGDKNVYNLTQLPMLQGYTPNQTSSNRCGYGEASIAMYENMVHMSSINESRADFYGRMIERTNNNNINMQAHNIFQVDDASTFRELSSTSKVQEPKNNFVSFCGNESFKLSKKDDLQVQPREQELMPNDNQVDLKTLKRKASNLDLDLDLSLKLNSRIIDHENQGSIEDHHEVGSNLSLSLYSQSSYNLCKRNKEGQDDSKEQEKRVNIGLDLTI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01700 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 126 IPR006447 GO:0003677
Trre13g01700 357 FunFam Myb family transcription factor 69 127 - -
Trre13g01700 357 Pfam Myb-like DNA-binding domain 73 123 IPR001005 -
Trre13g01700 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 51 224 IPR046955 GO:0003700
Trre13g01700 357 MobiDBLite consensus disorder prediction 38 55 - -
Trre13g01700 357 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Trre13g01700 357 Gene3D - 71 127 - -
Trre13g01700 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
Trre13g01700 357 MobiDBLite consensus disorder prediction 28 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01700 Trre-Chr13 14042858 14044937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01700 62 127 G2-like Transcription Factor Family AT2G42660 77.273 9.77e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g01700 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01700 - - gmx:102662997 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01700 13 14042858 14044937 Trre13g01700 13 14042858 14044937 ECH