Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01697 ATGTCAATATCACCAGCATACCAAGAACATCTTCCAGCATCACCAGAATGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTTGTTGGACTTCAAAGCATGCCAGGATTAGTAATTCTCTATGCAAGCATGGTGAAAAAAAAATGGGCAGTAAATTCAGCTTTCATGGCACTTTATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCATATAGAATGGCATTTGGTGATCAACTTTTACCCTTTTGGGGTAAAGGAGCACCAGCTTTAGGACAAAAGTTTCTTATTGCAAGAGCAAAAGTACCTGAAAGTACTCATTTTTTCAAGAATGGTGAAGTTGAAGCAAAAATGGAAGAACCCTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCAGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGTAGAATGAATATTAAAGCTTGGATGGCTTTTGTTCCACTTTGGCTTATTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTACCAATGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCATCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTACTCATGCTTGCAGGTTCTGGATTGCTATGGATGGGTTGGTCAGGTTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCAGCTTCAATGGCTGTGTTGAACACAAACATTTGTGCAGCAACTAGTCTCTTAGTGTGGACAACTCTTGATGTCATTTTCTTTGGCAAACCTTCTGTGATTGGAGCAGTTCAGGGTATGATGACTGGACTTGTTTGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATTTCATCTGGGAGCATTCCTTGGGTCACCATGATGATCTTACATAAGAAGTCAAGTCTTCTACAAAAGGTTGATGACACTCTTGGTGCATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTCCTCACCGGACTCTTGGCCGATCCAGCCCTATGTAGACTAATGTTGCCGGTAACCAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTTCTAAAGCAATTAGTGGCAGCATTGTTTGTTACTGCATGGAATATAGTCTCCACCTCAATCATTCTCCTTGTTATACAAATTTTCATACCCTTGAGAATGCCTGATGAGCAGCTCGAAATCGGAGATGATGCGGCTCATGGTGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGACACGATACATTAAATACTGGTACCACTGGAGTATCACCTTATGTTAATGGTGCAAGAGGTGTTACTATTAATTTATGA 1461 0.4162 MSISPAYQEHLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASMVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLIARAKVPESTHFFKNGEVEAKMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGSGLLWMGWSGFNGGAPYAANVAASMAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGISSGSIPWVTMMILHKKSSLLQKVDDTLGAFHTHAVAGLLGGLLTGLLADPALCRLMLPVTNSRGAFYGGSGGVQFLKQLVAALFVTAWNIVSTSIILLVIQIFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHDTLNTGTTGVSPYVNGARGVTINL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01697 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre13g01697 486 FunFam Ammonium transporter 6 451 - -
Trre13g01697 486 PANTHER AMMONIUM TRANSPORTER MEP2 9 458 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre13g01697 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Trre13g01697 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Trre13g01697 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Trre13g01697 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Trre13g01697 486 SUPERFAMILY Ammonium transporter 17 430 - -
Trre13g01697 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre13g01697 486 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Trre13g01697 486 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01697 Trre-Chr13 14010945 14016843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01697 130 486 Inorganic Solute Cotransporters AT2G38290 77.159 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01697 K03320 - gmx:100790119 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01697 13 14010945 14016843 Trre13g01697 13 14010945 14016843 ECH