Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01695 ATGGAATGCTACAACAACACTTTCTCTTATTCTTCAGGGTCATCTTCAAAAACAAAAGAGAAAAAGGGTGTGAAAAAAACCAAAAGATCATCAGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGGCATAGAATCAGTGACAGGTTTAAGATTCTTCAGAGTATGGTTCCTGGTGGGAATAAATTAGATACTGTTTCTATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGCTTCATCAAAGAATGATTAACTTTGTTGATGATTTTGATGAGTCATCATCACATATTTTGCTTCCTCAAGATAATTATTATTCTTCAAATGATAACATCATTCAGCATAACACTTCTGGTTCCTTTGAGTCTTTGCAGAATTTGCCACAGATACCACTTGAGCAGTTCTGTTTTCAAGGTGATCAAGAAATTAAAACCATGTTTAATGCCACTATGAAATATTAA 489 0.3333 MECYNNTFSYSSGSSSKTKEKKGVKKTKRSSVKLSTDPQSVAARERRHRISDRFKILQSMVPGGNKLDTVSMLEEAIHYVKFLKTQILLHQRMINFVDDFDESSSHILLPQDNYYSSNDNIIQHNTSGSFESLQNLPQIPLEQFCFQGDQEIKTMFNATMKY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01695 162 MobiDBLite consensus disorder prediction 1 17 - -
Trre13g01695 162 CDD bHLH_AtIND_like 35 94 - -
Trre13g01695 162 SMART finulus 40 89 IPR011598 GO:0046983
Trre13g01695 162 MobiDBLite consensus disorder prediction 1 45 - -
Trre13g01695 162 FunFam Transcription factor LAX PANICLE 37 99 - -
Trre13g01695 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 92 IPR036638 GO:0046983
Trre13g01695 162 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Trre13g01695 162 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 128 IPR045843 GO:0003700|GO:0006355
Trre13g01695 162 Gene3D - 26 93 IPR036638 GO:0046983
Trre13g01695 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01695 Trre-Chr13 13979348 13979836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01695 24 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 60.938 6.74e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g01695 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01695 - - gmx:113000114 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01695 13 13979348 13979836 Trre13g01695 13 13979348 13979836 ECH