Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01690 ATGGATTCTGATAGCATCCAAAGTTATAGATATAGATATGATGTGTTTATCAGTTTTAGAGGTTCCGACACACGCAACACCTTTGTTGACCATCTTTACGCTCATCTCACTAGAAAAGGTATTTTGGCCTTCAAGGATGACAAATTGCTTCAAAGTAAAAAACTTAAACAAGTTGTTTTCCCGGTTTTCTGTGACATTGATCCATCTCATGTGAGAAAACAAAATGGGGTGTATGAGGATGCCTTTGTTTTACACACCCAGCAACTCAAACATGATCCAGACAAAGTTGCTCAATGGAAGACTGCCATGACCTCTTTGGCTGGGTCAGCAGGTTGGGATGTCAGCAATAAGCCAGAGTTTGAAGAGATTGAAAAAATTGTTGAGGCCGTGATAAAAAAATTGGGTCATAAATTCTCAGGGTCTGCTGATGACCTTATTGGAATACAACCTCGTTTAGAAGCATTAGAAAGCCTTTTAAAACTAAGCTCAAAGAATGATGGTTTTCAAGTTTTAGGAATACGGGGGATGGGTGGAATAGGAAAGACAACTCTTGCGACTGTCTTGTATGACAAAATCTCATATCAGTTTGACGCTTGCTGTTACATTGAGAACGTTCGCAAAATTTATGAAGATGGCGGTTCTATTGCTGTGCAGAAACAAATTCTTTGTCGTACTATAGAAGAAAAAATTTTAGACACACACAGTCCTTCTGAAATAGCAAGAATTGTAAGAAATAGGCTACACAACATAAAGCTTCTTGTAGTTCTTGACAATGTTGATCAAATTGAGCAACTGCATGAATTGGATATAAAACATGTATTGCTTCACCCAGAAAGTAGAATAATCATAATCACTAGAGATGAGCATATTCTTAGAGCATATGGAGCAGATATAGTTTACGAGGTTGAATTGATGAATGGTAATGACGCTCATAAACTTTTGTGTAGAAAAGCTTTCATAAGTGATTATACAAGCAGTACATTTGCAGAGCTGATTCTTGAGGTTTTAAAATATACTCAAGGTCTTCCATTGGCAATTAGAGTAATAGGTTCTTTCTTGCATTCTCGAAATGCCAAGCAGTGGAAAGCTACCTTGGATAGATTGCGGAATAGTCCACCGGACAAAATATTGAAAGTGCTTCAGGTAAGTTATGAAGGACTTGACGAGGAAGATAAAGAAATATTCCTTCACATTGCTTGTTTCTTTAAAGGGGAGAGGAAGGATTATGTTAGCCGAATTTTAGATGCTTGTGGATTGCATCCTGATATTGGAATTCCACTTCTTGCTGAAAAATCACTCATAACCATTAAAAATGAGGAAATTCATATGCATGAAATGTTGCAAGAGTTGGGGAAGAAAATTGTTCGAGGACAACATCCAGATGAGCCAGGATGTTGGAGTAGGTTGTGGCTTTACCGAGATTTCCAATACGTGATGATGACCGAAAAGAAAGCAATAGATGCTAAAGCCGTAATTCTAAATCAGAAAGTGGATGACTTCAAATTGAATGAGTTGAGGGCTGAAGATTTATCTAAAATGGAGCAGTTGAAAATGCTAATATTGAATCATAAGAATTTTTCAGGAAGACCCTCATTTCTTTCTAATTCCCTACGTTATCTTTTGTGGAATGGTTACCCTTTCATTTCTTTGCCATCAAATTTTCAACCATATCACCTTGTTGAATTGAATTTGCCTGATAGCAGCATCGAACAACTATGGACAGATACCCAGCAACTACCCTATTTGAAAAGGATGGATCTGAGCAACTCTAAAAACCTCAAGATGACACCGTGCTTTAAAGGGATGCAGAATCTTGAGCGACTAGATCTTACAGGATGCATAAACTTATGGCATCTGCATTCATCAATTGGACTTCTTACAGAACTTCAATTCTTGAGCTTGCAGAACTGTAGCAGTCTGGTCTGCTTTGATTTTGGCAGTGAATCAAAGTTAAGTTCTTTGAGAGTTTTGTGTCTCTCTGGTTGCACAAAACTTGAAATTACTCCCGATTTCAGGGGACTATTAAATCTTGAGTATCTTGACATGGATCTATGTACAAGTTTATATACGATTCATAAATCTATTGGGTATCTTACAAAGCTTAAATTCTTAAGTTTGAGAGGCTGCATAAATCTTGTCAGAATACCTGACAGCTTTAACGATATGACATTTCTTATGACACTAGATCTATGTGGATGCTCTAAACTTACGAATCTTCCGCTAGGATCTATATTCAGTTCTAAAACTCTACAATTTTTTATTTTTATCGACCTAAGCTTTTGTAATATTTCTGAAGTACCTGATGCTATTGGAGAACTAAGAGGTTTAGAGAGACTAAACTTACAGGGAAATAACTTCACTGGACTACCTCTTACCATCCAAACACTTTCCAGTCTATCATATTTAAATTTGTCACATTGTCATAGGCTTCAAGTTTTGCCTTGGACTCAAACAGAAAGCGGTCCATCGGATTCTGTGGGAAGATATTTTAAAACAAAGTCCGGATCCCGTGATCACAGGTCAGGATTGTATGTTTTTGATTGTCCCAAGCTGGAGGAGGCATACACAGTCTGTCAATACACATTATTTAAATGGCTTAAAAGACTAGTTAAGGAGCCTCATCACTTCCGATGTGGCTTTGACATTATTCTTCCCTGGCTATGGAGAGATATTCCTTATTGGTTTGATTATCGATTTAAAAGAGGTTCAATAATAAGGATAAAGGAGTCTAATCTGCAAGTCGACTGGCTCGGCTTTGTTTTTTGTATATTATTTGTGGTGAATAGTTATTCTGTAGTGTCTGGTTCTCCACATCAATCACTTTCCGCACCACTTCCACATCCTTTTTATCTTTCTTTTGAAAGTGAATACACGGAAGAGCGATTTGATATGCCACTTAATCTGGAACGGAATATGGTTGATGGCAAAAATTATCTTTGGACAATCTATATCTCTCAAGAGCACTGCCATTTTGTGAAAACTGGAGCGCGAATCAGATTTAAAGCCGGGCAAGGATTGATTATGAAGGAGTGGGGGTTACGCATGCTAACCAAGAAAGAAATAGAGGACTCGGAAGAGGCAACACTGGGAAATAAGAATCTGAGAAAAGATCGCCCTTTACTGGTCATTGATAATGTAGAGGAAAGCAACAACAAATTTGAGCCTAAAATCCAGCTTCCTTACAACTGGTTATTATCTGACGAAGATGAAGCCATGATTGATGAAACTAAGAGGAAAGAAATTGGTCTCTCTAATCTAGGCCTTTTGACAGCTTAG 3276 0.3761 MDSDSIQSYRYRYDVFISFRGSDTRNTFVDHLYAHLTRKGILAFKDDKLLQSKKLKQVVFPVFCDIDPSHVRKQNGVYEDAFVLHTQQLKHDPDKVAQWKTAMTSLAGSAGWDVSNKPEFEEIEKIVEAVIKKLGHKFSGSADDLIGIQPRLEALESLLKLSSKNDGFQVLGIRGMGGIGKTTLATVLYDKISYQFDACCYIENVRKIYEDGGSIAVQKQILCRTIEEKILDTHSPSEIARIVRNRLHNIKLLVVLDNVDQIEQLHELDIKHVLLHPESRIIIITRDEHILRAYGADIVYEVELMNGNDAHKLLCRKAFISDYTSSTFAELILEVLKYTQGLPLAIRVIGSFLHSRNAKQWKATLDRLRNSPPDKILKVLQVSYEGLDEEDKEIFLHIACFFKGERKDYVSRILDACGLHPDIGIPLLAEKSLITIKNEEIHMHEMLQELGKKIVRGQHPDEPGCWSRLWLYRDFQYVMMTEKKAIDAKAVILNQKVDDFKLNELRAEDLSKMEQLKMLILNHKNFSGRPSFLSNSLRYLLWNGYPFISLPSNFQPYHLVELNLPDSSIEQLWTDTQQLPYLKRMDLSNSKNLKMTPCFKGMQNLERLDLTGCINLWHLHSSIGLLTELQFLSLQNCSSLVCFDFGSESKLSSLRVLCLSGCTKLEITPDFRGLLNLEYLDMDLCTSLYTIHKSIGYLTKLKFLSLRGCINLVRIPDSFNDMTFLMTLDLCGCSKLTNLPLGSIFSSKTLQFFIFIDLSFCNISEVPDAIGELRGLERLNLQGNNFTGLPLTIQTLSSLSYLNLSHCHRLQVLPWTQTESGPSDSVGRYFKTKSGSRDHRSGLYVFDCPKLEEAYTVCQYTLFKWLKRLVKEPHHFRCGFDIILPWLWRDIPYWFDYRFKRGSIIRIKESNLQVDWLGFVFCILFVVNSYSVVSGSPHQSLSAPLPHPFYLSFESEYTEERFDMPLNLERNMVDGKNYLWTIYISQEHCHFVKTGARIRFKAGQGLIMKEWGLRMLTKKEIEDSEEATLGNKNLRKDRPLLVIDNVEESNNKFEPKIQLPYNWLLSDEDEAMIDETKRKEIGLSNLGLLTA 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01690 1091 Gene3D - 124 298 IPR027417 -
Trre13g01690 1091 Pfam TIR domain 54 139 IPR000157 GO:0007165
Trre13g01690 1091 Pfam TIR domain 13 51 IPR000157 GO:0007165
Trre13g01690 1091 SUPERFAMILY L domain-like 507 815 - -
Trre13g01690 1091 SMART till_3 12 109 IPR000157 GO:0007165
Trre13g01690 1091 Gene3D Ribonuclease Inhibitor 669 820 IPR032675 -
Trre13g01690 1091 Gene3D - 10 51 IPR035897 -
Trre13g01690 1091 Pfam C-JID domain 889 1022 IPR045344 -
Trre13g01690 1091 Gene3D - 52 107 IPR035897 -
Trre13g01690 1091 Gene3D Ribonuclease Inhibitor 496 668 IPR032675 -
Trre13g01690 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 398 IPR027417 -
Trre13g01690 1091 Pfam Leucine rich repeat 756 808 IPR001611 GO:0005515
Trre13g01690 1091 ProSiteProfiles TIR domain profile. 1 134 IPR000157 GO:0007165
Trre13g01690 1091 Gene3D - 305 388 IPR042197 -
Trre13g01690 1091 PRINTS Disease resistance protein signature 339 353 - -
Trre13g01690 1091 PRINTS Disease resistance protein signature 649 665 - -
Trre13g01690 1091 PRINTS Disease resistance protein signature 170 185 - -
Trre13g01690 1091 PRINTS Disease resistance protein signature 246 260 - -
Trre13g01690 1091 SUPERFAMILY "Winged helix" DNA-binding domain 374 476 IPR036390 -
Trre13g01690 1091 Pfam Leucine Rich Repeat 558 577 IPR011713 -
Trre13g01690 1091 Pfam NB-ARC domain 159 376 IPR002182 GO:0043531
Trre13g01690 1091 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 112 IPR035897 -
Trre13g01690 1091 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 651 825 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01690 Trre-Chr13 13958994 13962873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01690 647 814 WRKY Transcription Factor Family AT4G12020 36.686 1.31e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01690 - - mtr:25498786 1306.58