Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01686 ATGGATTCTGAGAGCATCCAAAGCTATAGATATAAATATGACGTGTTTATCAGTTTTAGAGGTGTTGACACCCGCAATACCTTTGTTGACCATCTCTACGCCCATCTTACTAGAAAAGGTATTTTGGCCTTCAAGGATGACAAATTGCTTCAGAAAGGTGAATCAATTTCATCCCAACTTCTACAGGCAATTAAAGATTCGCGGGTTTCTATCGTTGTCTTCTCAAAAGATTATGCTTCGTCAACATGGTGTTTGGATGAAATGACTGCTATTCATGAATGCAGTAAAAGACTTAAACAAGTTGTTTTCCCTGTTTTCTGTGACATTGATCCATCTCATGTGAGAAAACAAAATGGGGTGTATGAGGATGCCTTTGTTTTACACACCGAGCAACTCAAACATGATCCAGACAAAGTTGCTCAATGGAAGAGTGCCATGACCTCGTTGGCCGGATCCGCAGGCTGGGATGTTAGGAATAGGCCAGAGTTTGTAGAGATTGAAGAAATTGTTGAGGCTGTGATAAAAAAATTGGGTCATAAATTCAAAGGGTCTGCTGATGACCTTATTGGAATACAACCTCGTTTAGAAGCATTAGAAAGCCTTTTAAAACTAAGCTCAAAGAATGGTGGTTTTCAAGTTTTAGGAATATGGGGGATGGGCGGAATAGGAAAGACAACTCTTGCGACTGTCTTGTATGACAGACTCTCATATCAGTTTGACGCTTGCTGTTACATTGAGAATGTTCGTAAAATTTATGAAGATGGCGGTTCTATTGCTGTGCAGAAACAAATTCTATCTCGTACTATAGAAGAAAAAATTCTAGACACACACAGTCCTTCAGAAATAGCAAGAATTGTAAGAAATAGGCTACACAACATAAAGCTTCTTGTAGTTCTTGATAATGTTGATCAAATTGAGCAACTGAATGAATTGGATATAAAACATGTATTGCTTCACCCAGAAAGTAGAATAATCATAATCACTAGAGATGAGCATATTCTTAAAGCATATGGAGCAGATATAGTTTACGAGGTTGAATTGATGAATTGTAATGAAGCTCATAAACTTTTGTGTAGAAAAGCCTTCATAAGTGATTATTCAAGCAGTACATTTGCAGAGCTGATTCCCGAGGTTTTAAAATATACTCAATGTCTTCCGTTGGCAATTAGAGTAATAGGTTCTTTCTTGCACTCTCGAAATGCCAAGCAGTGGAAAGCTACCTTGGATAGATTGCGGAATAGTCCGCCGGAAAAAATATTGAAAGTGCTTCAGGTAAGTTATGAAGGACTTGATGAGGAAGATAAAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGAGAGAGGAAGGATTATGTCAGCCGAATTCTAGATGCTTGTGGATTGCAGCCTGATATTGGAATTCCACTTCTTGCTGAAAAATCACTCATAACCATTAAAAATGAGGAAATTCATATGCATGAAATGTTGCAAGAGTTGGGGAAGAAAATTGTTCGAGGACAACATCCAGACGAGCCAGGATTTTGGAGTAGGTTGTGGCTTTACCAGGATTTCCATCATGTGATGATGACCAAAAAGAAAGCAATAGAGGCTAAAGCCATAGTTTTAAATCAGAAAGAGGATGACTTCAAATTCAATGAGTTAAGGGCTGAAGATTTGTCCAAAATGGAGCACTTGAAACTGCTCATATTAAATCATAAGAATTTTTCAGGAAGGCTCTCATTTCTTTCTAATTCCCTACATTATCTTTTGTGGAATGGTTACCCTTTCATTTCTTTGCCATCAAATTTTCAACCATATCACCTTGTTGAATTGAATTTGCCTGGTAGCAGCGTCGAACAACTATGGACAGACATCCAGCAACTACCTTATTTGAAAAGGATGGATCTGAGCAACTCTAAAAATCTCAAGATGACCCCATGCTTTAAAGGGATGCAGAATCTTGAGCGACTAGATCTTTCAGGATGCATAAGCTTATGGCTTGTTCATTCATCAATTGGACTTCTTACAGAACTTCAATTCTTGAGCTTGCAGAATTGTAGTAATCTGGCCTGCTTTGATTTTGGAAGTGAATCAAAGTTACGTTCTCTGAAAGTTATGTGTCTCTCTGGCTGCACAAAACTAGAAAATACTCTCGATTTCAGTGGATTATTAAACCTCGAGTATCTTGACATGGATCAATGTACAAGTTTATATACGATTCATAACTCTATTGGGAATCTTACAAAGCTTAGATTCTTAAGCTTGAGAGGCTGCACAAATCTTGTCAAAATACCTGACAGCTTTAACAGTATGACATTTCTAATGACACTGGATCTATGCGGCTGCTCTAAATTTATGAATTTTTCGCTGGGATCTACATTTAGTTCTCAAAATCAACAACCTTTAATTTTTCTTGACTTAAGTTTTTGCAATATTTCTAAAGTACCTGATGCTATTGGAGAATTAAGGGGTTTAGAGAGACTAAATTTACAGGGCAATAGCTTCACTGAACTACCTTTTACCATCCATAGACTTTCTGGTCTATCATATTTAAATGTGTCACATTGTCATAGGCTTCAAATTTTGCCTTGGAGTCCAACAGAAAGTGGTCCATCAGATTTGGTGGGAAGATATTTTAAAACAAAGTCTGGATCCCGTGATCACAGGTCAGGATTATATGCTTTTGATTGTCCCAAGCTGGAGGAGGCATTCAAAGAGTTCTCTCGTCATTCAAAAAGCTACACATTATTTATATGGCTAACAAGACTAGTTAAGGAACCTCGTCACTTCCGATGTGGCTTTGACATTATTCTTCCCTGGCCATGGGGAAAAATTCCTTATTGGTTTGATTACCAATTTAAAAGGGGTTCAATAATAAGGATAAAGGAGTCTAATATGCATATCGACTGGCCCGGCTTTGTTTTTTGTATATTATTTGAGGTGAATAATCATTCTGCAGTGTATGAATCTCCACATCAATCGCTTTCCTCAGCACTGCCACATCCTTTTTATCTTTCTTTTGAGAGTGAATACACCGAAGAACGCTTTGATGTGTCTCTTAATCTGGAACGGAATATGATTGATGGCAAAGATTATCTTTGGACAATCTATATCTCTCAAGAACACTGCCATTTTGTGAAAACAGGAGCGCAAATCACATTTAAAGGCCGTCAAGGTTTGATTATGAAGGAATGGGGGTTGCGCGTGCTAACCATGACATACATTTACGAATCAGAAGGGCCATTCCTGGTCATTGATAAGGAGGATCCGAGAATAGATAATCCTGTACTGGTCATTGATATTGTAGAGGAAAGCAACAACAAATTTGAGCCTAAAATCCAACTTCCTTACAACTGGTTTATATCTGACGAAGATGAAGTCGTGATTGATGAAACTAAGAGGAAAGAAATTGATCTTTCTAATCTAGGCCTTTTGGCAGATTAG 3426 0.3768 MDSESIQSYRYKYDVFISFRGVDTRNTFVDHLYAHLTRKGILAFKDDKLLQKGESISSQLLQAIKDSRVSIVVFSKDYASSTWCLDEMTAIHECSKRLKQVVFPVFCDIDPSHVRKQNGVYEDAFVLHTEQLKHDPDKVAQWKSAMTSLAGSAGWDVRNRPEFVEIEEIVEAVIKKLGHKFKGSADDLIGIQPRLEALESLLKLSSKNGGFQVLGIWGMGGIGKTTLATVLYDRLSYQFDACCYIENVRKIYEDGGSIAVQKQILSRTIEEKILDTHSPSEIARIVRNRLHNIKLLVVLDNVDQIEQLNELDIKHVLLHPESRIIIITRDEHILKAYGADIVYEVELMNCNEAHKLLCRKAFISDYSSSTFAELIPEVLKYTQCLPLAIRVIGSFLHSRNAKQWKATLDRLRNSPPEKILKVLQVSYEGLDEEDKEIFLHIACFFKGERKDYVSRILDACGLQPDIGIPLLAEKSLITIKNEEIHMHEMLQELGKKIVRGQHPDEPGFWSRLWLYQDFHHVMMTKKKAIEAKAIVLNQKEDDFKFNELRAEDLSKMEHLKLLILNHKNFSGRLSFLSNSLHYLLWNGYPFISLPSNFQPYHLVELNLPGSSVEQLWTDIQQLPYLKRMDLSNSKNLKMTPCFKGMQNLERLDLSGCISLWLVHSSIGLLTELQFLSLQNCSNLACFDFGSESKLRSLKVMCLSGCTKLENTLDFSGLLNLEYLDMDQCTSLYTIHNSIGNLTKLRFLSLRGCTNLVKIPDSFNSMTFLMTLDLCGCSKFMNFSLGSTFSSQNQQPLIFLDLSFCNISKVPDAIGELRGLERLNLQGNSFTELPFTIHRLSGLSYLNVSHCHRLQILPWSPTESGPSDLVGRYFKTKSGSRDHRSGLYAFDCPKLEEAFKEFSRHSKSYTLFIWLTRLVKEPRHFRCGFDIILPWPWGKIPYWFDYQFKRGSIIRIKESNMHIDWPGFVFCILFEVNNHSAVYESPHQSLSSALPHPFYLSFESEYTEERFDVSLNLERNMIDGKDYLWTIYISQEHCHFVKTGAQITFKGRQGLIMKEWGLRVLTMTYIYESEGPFLVIDKEDPRIDNPVLVIDIVEESNNKFEPKIQLPYNWFISDEDEVVIDETKRKEIDLSNLGLLAD 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01686 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 683 IPR044974 GO:0006952
Trre13g01686 1141 Pfam TIR domain 12 182 IPR000157 GO:0007165
Trre13g01686 1141 Gene3D - 10 183 IPR035897 -
Trre13g01686 1141 ProSiteProfiles TIR domain profile. 11 177 IPR000157 GO:0007165
Trre13g01686 1141 Pfam NB-ARC domain 203 427 IPR002182 GO:0043531
Trre13g01686 1141 SUPERFAMILY L domain-like 551 858 - -
Trre13g01686 1141 PRINTS Disease resistance protein signature 382 396 - -
Trre13g01686 1141 PRINTS Disease resistance protein signature 289 303 - -
Trre13g01686 1141 PRINTS Disease resistance protein signature 643 659 - -
Trre13g01686 1141 PRINTS Disease resistance protein signature 213 228 - -
Trre13g01686 1141 Gene3D - 184 341 IPR027417 -
Trre13g01686 1141 Gene3D Ribonuclease Inhibitor 692 790 IPR032675 -
Trre13g01686 1141 Gene3D Ribonuclease Inhibitor 791 896 IPR032675 -
Trre13g01686 1141 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 179 - -
Trre13g01686 1141 SUPERFAMILY "Winged helix" DNA-binding domain 418 521 IPR036390 -
Trre13g01686 1141 Pfam Leucine Rich Repeat 601 620 IPR011713 -
Trre13g01686 1141 Gene3D Ribonuclease Inhibitor 540 689 IPR032675 -
Trre13g01686 1141 SMART till_3 12 152 IPR000157 GO:0007165
Trre13g01686 1141 Gene3D - 348 431 IPR042197 -
Trre13g01686 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 441 IPR027417 -
Trre13g01686 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01686 Trre-Chr13 13941182 13946799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01686 690 859 WRKY Transcription Factor Family AT4G12020 35.673 1.85e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01686 - - mtr:25498786 1388.24