Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01683 ATGAACCGTTCATCCACCACATTGTTTATCATCGTCGCCACGTTCTGTTTCGTTTTAGAATTCGAAGCCAAAACAATCGACCCCTATAAGGTTCTCGGGGTTGATAAAACTGCAAGTCAACGAGAAATTCAGAAGGCTTTCCACAAACTCTCTCTTCAATATCATCCTGACAAGAACAAGGCCAAAGGTGCACAAGAGAAGTTTGCTCAGATAAATAACGCGTATGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGACTTGTATGGAGATGAGAAAGGAAATCCTGGATTTGAAGCTGGCCACCCTGGAGGTTATGGTGGTGCTGGACATAGCGGCTTTAACTTCAGACCAGGGGAACAATGGAGTAGCGGTGGCCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGCAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCTGGGCCCAAGGGTTCCCCCAAAAATTTTAAAGCCATAAATTCAAATATCTACAAGAAAGAAATAGTTGATGAAGGCATGACTTGGCTTTTGTTATCTTATTCACCCTCATTGAGGGGCATCCAACAGTTTGAGTCCACTATAGGGGATGTTTCCATTACATTGCAAGGAGCTTTGAAGGTTGGTAGCATAAACTGTGAAAAGGAAGTCTCATTATGTAAGGAGCTTGGTATATATCCTCGCAAAGCTCCAAGGATATTTGTTTATTCTTACAAGGAGAATGTAAAGGGTTCTCTGGTGGAGTACGGTGGTAACTTGGCTGTTAATGATTTGAAGGCTTTCTGTCAACAACACTTGCCAAGATTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTAAGCACTACTGGAAAGTTGCCTAGGGTTCTGCTTCTCTCTTCCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGTAAGCGCATTACTTTCGGTGATGTAGAGGTTCATGATTCTGATTTGAGAGTGGAAAAACTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAGATTATTCTGAAAACAGGGGTTTCTGTGAAAGATGTAAAATCTGGCGTAAAAGATCTTAGTAACATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGGCCAAGAAAGCACAAGCTGATTCAGAAGACGGACACATTCAGTTGCTTTCTCCGTCAAATTTCGAGGCTCTCTGTGGGGAAAAAACTCCAGTTTGCATAATTGGTGCCTTTAGATCTTCAAAAGCAAGGGAAAAGCTAGAATCATTTCTCTCTTTGGTCTCACAGATGTCCTTGTCAAGAAAACCAAATGGAAGCGGCAGCTCTAGGGACTCCATTTCGTATGCTCTCTTAGACGCTTCAAAGCAACAATCCTTTTTAAACGCATTTGACAAAACGGGTTATAAATCATTAGATAAGTTGTTGATTGCTTACAAACCTCGAAAAGGGAAATTCGCTGTATTTATAGGTGATATGACAATAGAGGAGGTAGAGAATTTTATCAGCTCCGTTCTAAGCGGAGATATACCCTTTAGGGAAACATATAAGAAGCCTGTACTCAAATAG 1668 0.4053 MNRSSTTLFIIVATFCFVLEFEAKTIDPYKVLGVDKTASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGYGGAGHSGFNFRPGEQWSSGGQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSGPKGSPKNFKAINSNIYKKEIVDEGMTWLLLSYSPSLRGIQQFESTIGDVSITLQGALKVGSINCEKEVSLCKELGIYPRKAPRIFVYSYKENVKGSLVEYGGNLAVNDLKAFCQQHLPRFSKRIDLNQLDQLSTTGKLPRVLLLSSKKNTPVIWRVLSGLYRKRITFGDVEVHDSDLRVEKLGVDALPAIVGWLPNGEKIILKTGVSVKDVKSGVKDLSNILDSFEKVSKKETSSQAKKAQADSEDGHIQLLSPSNFEALCGEKTPVCIIGAFRSSKAREKLESFLSLVSQMSLSRKPNGSGSSRDSISYALLDASKQQSFLNAFDKTGYKSLDKLLIAYKPRKGKFAVFIGDMTIEEVENFISSVLSGDIPFRETYKKPVLK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01683 555 SUPERFAMILY Thioredoxin-like 419 544 IPR036249 -
Trre13g01683 555 Pfam DnaJ domain 27 88 IPR001623 -
Trre13g01683 555 SUPERFAMILY Thioredoxin-like 180 289 IPR036249 -
Trre13g01683 555 Coils Coil 61 81 - -
Trre13g01683 555 PRINTS DnaJ domain signature 63 83 IPR001623 -
Trre13g01683 555 PRINTS DnaJ domain signature 47 62 IPR001623 -
Trre13g01683 555 PRINTS DnaJ domain signature 83 102 IPR001623 -
Trre13g01683 555 PRINTS DnaJ domain signature 29 47 IPR001623 -
Trre13g01683 555 Gene3D Glutaredoxin 180 289 - -
Trre13g01683 555 PANTHER DNAJ PROTEIN ERDJ3A 10 555 - -
Trre13g01683 555 SUPERFAMILY Chaperone J-domain 24 117 IPR036869 -
Trre13g01683 555 SMART dnaj_3 26 83 IPR001623 -
Trre13g01683 555 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Trre13g01683 555 CDD DnaJ 27 80 IPR001623 -
Trre13g01683 555 Gene3D DnaJ domain 24 167 IPR036869 -
Trre13g01683 555 FunFam Molecular chaperone DnaJ 24 170 - -
Trre13g01683 555 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01683 Trre-Chr13 13904218 13907381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01683 29 90 C2H2 Transcription Factor Family AT1G74250 42.647 2.58e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01683 13 13904218 13907381 Trre13g01683 13 13904218 13907381 ECH