Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01678 ATGTGTATGACCATTGAAAATGAGTATCAGTTTTCATCATTTGCTGAAATTAATTCAACTAGGTCAAGTTGGAATTGTAGGGCAAAGATCATACGACTTTGGCAAACTTCTAATTTCAATCGTAACACATTGCCTTTTTCTATTGAAATGGTTTTAATGGATTCTTATGGTGGTAGAATTCATGCTACAGTCAAAAGAACTCTTATTTATAAATTTAAGGATGAGCTAATAGAGGGAAAAGTGTATACTTTTGAAAAGATAGGAGTCTCACCTAATGTTGGAGCTTATCGTACTACTCATCACAATTTTAAATTAAATTTCAAAGCCACTACATTGATTCAAAGACTTTTTAATCAAGACATTGTTAGATCTCCATATAACTTTGTTCCAATTAGGCAGATTGTAGGAGGCTCTTATGACACTGATTTCTTAGTTGATGTTATTGGAATATTGATTAATGTTGGTCGTGAGCGTGAAATTAATGATCAAGATGGAACACCCACAAAAGTGAATGTCATTGAAATAGAGCAAGATGGGAGTAAAATTCAATGTTATTTGTATGGGGCATATGTTGATGTACTTAATGCTTTTCTTGGAGCTGGACATGTCCAAAATGTTGCTGTCGTTATGATGTTTGCCAAGGCCGTAGCTTTTCAAGGCAAGATTCATATTCAAAACTGTCTCAACTCTACCTATTTGTTCTTTAACCCTTTCTAA 717 0.3361 MCMTIENEYQFSSFAEINSTRSSWNCRAKIIRLWQTSNFNRNTLPFSIEMVLMDSYGGRIHATVKRTLIYKFKDELIEGKVYTFEKIGVSPNVGAYRTTHHNFKLNFKATTLIQRLFNQDIVRSPYNFVPIRQIVGGSYDTDFLVDVIGILINVGREREINDQDGTPTKVNVIEIEQDGSKIQCYLYGAYVDVLNAFLGAGHVQNVAVVMMFAKAVAFQGKIHIQNCLNSTYLFFNPF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01678 238 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre13g01678 238 Gene3D - 10 115 IPR012340 -
Trre13g01678 238 Gene3D - 119 238 IPR012340 -
Trre13g01678 238 CDD RPA1_DBD_B_like 146 237 - -
Trre13g01678 238 CDD RPA1_DBD_A_like 27 113 - -
Trre13g01678 238 SUPERFAMILY Nucleic acid-binding proteins 126 236 IPR012340 -
Trre13g01678 238 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01678 Trre-Chr13 13843819 13844797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01678 3 237 Core DNA Replication Machinery Family AT2G06510 22.222 6.90e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01678 - - tpra:123915358 310.842