Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01673 ATGCCTAAGCGACCGTTTGGGGATATGTTGGGGGAAGGAAGTACAAGTTCTGGTTCTAGTTCTTATAAGGATCATATATATGATGTGTTTATCAGTTTTAGAGGAGTTGACACGCGCAACACTTTTGTTGACCATCTCTATGCTCATCTCATTAGAAAAGGTATTTTTGTTTTTAAAGATGACAAACGGCTTCAGAAAGGTAAATCCATTTCACCCCAACTTCATCATGCAATTAAAGAGTCTCGTGTTTCCATTATTGTCTTCTCAAAAAGTTATGCTTCCTCAACTTGGTGTATGGATGAAATGGTTGCTATTGCTAAGTGCCGTAAAAAACAAACTGTTTTCCCTGTTTTTTATGATGTTGATCCATCTCTTGTCCGAAAACAAAGTGGACAGTATCAGAATGACTTTGTTTTACACGCCGACCGACTCAAACATGATCCAGAAAGGGTCAATGGGTGGAAGAGAGCTATGACTTATTTCGCTGGAATTGCTGGTTGGGATGTTAGGAATAAGCCAGAATTTGATGAGATCGAAAAAATTGTCCAGGCTGTAATAAAAGCATTGGGTCATAAATTCTCAGGATTTGCTAATGACCTTATTGGAATACAACCTCGTGTAGCAGCATTAGAAAGACTTTTAAATTTAAAGTCAGAGGAGGATGGTTTTCGAGTTTTAGGAATACGGGGGATGGATGGCATAGGGAAGACAACTCTTGCAACTGTCTTGTATGACACAATCTCACATCACTATCAATTTGGTGCTTGTTGTTTTATCAAGGATGTTAGCACAATTTATAGAGATGGTGGTGCTATTGCTTTGCAGAAACAAATTCTTCATCAAACTCTGAAAGAACAAAATCTGAATGCATACTGTCCTTCTGAAATATCTGGAATTATAGCAAATAGGCTATACAACATGAAGCTCCTTGTAGTTCTTGACGATGTTGATCAAATTGAGCAACTACAAGAATTGCACATAAATCCCAAATTGCTTCATCTAGGAAGTAGAATAATCATAACCACTAGAGATGTGCATATTCTTGAATTGTATGGGGCGGATATAATTCACGAGGTTCAATTGATGAATGATAATGATGCTCAGGAACTTCTATGTCGAAAAGCTTTTAAAAGTGATAATTCAAGCAGCAATTATACAGAGCTTATTCCTAAGCTTTTAAAATATACTGAAGGTCTTCCATTAGCAATTAGAATAATGGGTTCTTTCTTGTTTAATAGAAATACCACCCAATGGAGAGCTACCCTGAAAGGATTGGAGAATAATCCAGATAGAGGGATTATGAAAGTGCTACAGTCAAGTTTTGAGGGACTAGAGCTAAGAGAGAGAGAAATCTTTTTGCACGTTGCTTGCTTCTTTGAGGGGGAAAGGGAGGATTATGTATGGCGAATTCTAGATGCTTGTGGATTGCAGCCTGAAATTGGAATTTCACTTATTGCTGAAAAATCGTTCATAACCATTAGAAATCAAGAAATTCATATGCATAAAACGTTGCAAGAGTTGGGAAAGAAAATTGTCCGGGAACAACATCCTGATGAGCCAAGATTATGGAGTAGATTGTGGTTCTATCGTAATCTCCATGAAGCGATGATCTCAAAACTGGAAGCAATAAAAGCTAAAGCAATAATTCTAAATCAAAAGGAGGATGTTTCTTATTTCAATCAGCTGAGTGATGACGATTTACCGAAAATGGAAAACTTGAAATTGCTCATATTAGATCATTCTAACTTTTCAGGAAGCCTCAAATTTCTTTCTGATTCCCTATGCTATCTTATGTGGAAAGGTTACCCTTTCACTTCTTTTCCATCAAATTTTCAACCATATAATCTTGTGGAATTGAATATGCCTGATAGCAACATTGAACAATTGTGGATAGGCATTCAGCGTCTCCCCAAATTAAAAAGGATGGACTTGAGCAACTCCAAAAATCTGAAGGTGACTCCTTGCTTTGAAGTGATACAAAATCTTGAGCGGCTAGATCTTACAGGATGCATAAGCTTGTTGGAAGTGCATCCATCCATTGGACTTCTTACAAAACTTGTATTCTTGAGTTTGCATAACTGTACTAGTCTAGTCACCCTTGATTTTGGAAATGCAACAAGATTAAGGTCTCTAAAAGTTTTGCGTCTCTCTGGATGTACAAAACTTGAAAAAACGCCGAATTTTAGTGGATTATCAAATCTCCATTACCTTGATATGGATCAATGTGCAGGTTTATCCACAATTCATGAATCTGTTGGGGCTCTTGCCGAACTTAGATTTTTAAGTTTGAGATACTGCAGAAATCTTGTTGAAATACCTGCACAAATAATGAGATCTCTTACAACTCTAGATCTTTTTGGATGCTTTAAATTTAATAAGCTGCTATTGAATCAGATTTCCACTTCCTCTCTGCAATCTTTGATTTTTCTAGACTTAAGTTTTTGCAATATTTCTCAAGTACCTAATGCTTTTGGAGAATTCAAGTGTTTAGAAAGACTAAATCTTCAGGGAAATAACTTCACCGAACTACCCTCCAGTTTCAGTAGACTTCACAATCTATCATATTTAAACTTGTCACATTGTCATAAGCTTCAAAGTTTGCCTTATCTCCCAAAATACAGTGGTCCATCAAATTCAGTGGGAAGATATTTTAAAACAACATCTGGATCACGTAATCATAGATCAGGATTATATATTTTTGACTCTCCCAATTGCATGATGATGAGATCCTCCTTTAGAGAATATTCTTATCAGCACTTCATTAAATGGGTACCAAGACTGGTTAAGAATCCTGCTCACTTTCGGTGTGGCTTTGACATTGTTCTTCCTTGGCATGAGAAAACCGGTTATGGAAATCAAATCATTCCCAAGACTTTCCATCATTGGTTTAAAGGGGGTTCAATAGTAAGGATAAATGACCGTGTTATGGATGTTGACTGGCTCGGCTTTCTCTTTTATGTAAAATTTGAGTTAAGTTTTCATCCTGAACTATTTTGTTCTTCACATCAATCGCCCTCTTCGTCACTGCCCCATCCTTTTTATCTTTCTTTTGAGAGTGAATTCACAGAAGAGCGATTTGATATGCCACTTAATTTAGAATCAAACCAGGTTGATGGAAAACATTACCTTTGGATGAGCTATATCTCTCGGGAACATTGCCATTTTGTAAAAACAGGAGCACAAATCACATTTAAAGCCCGTCAAGGTTTGATTATCAAGGAATGGGGGTTGCGTGTCATAACCAAGAAAGACACAAAGAGCTCAAGAATGAAAAGGAGCGTACATCTTTCTTTAGAGAATGTGAAAGTAAAACAAAGAAGCACCAACAGCTTTGAGCCTAAAATCCAACTTCCTTACAATTGGTTTGTTTCTGACAAAGATGAAGCTGAGGGGGATGAAGCCAAGGGAAAAGAAACTCATCTCTTTAATCTTGGCCTTTCAACCGAAATACGACAGTGA 3459 0.37 MPKRPFGDMLGEGSTSSGSSSYKDHIYDVFISFRGVDTRNTFVDHLYAHLIRKGIFVFKDDKRLQKGKSISPQLHHAIKESRVSIIVFSKSYASSTWCMDEMVAIAKCRKKQTVFPVFYDVDPSLVRKQSGQYQNDFVLHADRLKHDPERVNGWKRAMTYFAGIAGWDVRNKPEFDEIEKIVQAVIKALGHKFSGFANDLIGIQPRVAALERLLNLKSEEDGFRVLGIRGMDGIGKTTLATVLYDTISHHYQFGACCFIKDVSTIYRDGGAIALQKQILHQTLKEQNLNAYCPSEISGIIANRLYNMKLLVVLDDVDQIEQLQELHINPKLLHLGSRIIITTRDVHILELYGADIIHEVQLMNDNDAQELLCRKAFKSDNSSSNYTELIPKLLKYTEGLPLAIRIMGSFLFNRNTTQWRATLKGLENNPDRGIMKVLQSSFEGLELREREIFLHVACFFEGEREDYVWRILDACGLQPEIGISLIAEKSFITIRNQEIHMHKTLQELGKKIVREQHPDEPRLWSRLWFYRNLHEAMISKLEAIKAKAIILNQKEDVSYFNQLSDDDLPKMENLKLLILDHSNFSGSLKFLSDSLCYLMWKGYPFTSFPSNFQPYNLVELNMPDSNIEQLWIGIQRLPKLKRMDLSNSKNLKVTPCFEVIQNLERLDLTGCISLLEVHPSIGLLTKLVFLSLHNCTSLVTLDFGNATRLRSLKVLRLSGCTKLEKTPNFSGLSNLHYLDMDQCAGLSTIHESVGALAELRFLSLRYCRNLVEIPAQIMRSLTTLDLFGCFKFNKLLLNQISTSSLQSLIFLDLSFCNISQVPNAFGEFKCLERLNLQGNNFTELPSSFSRLHNLSYLNLSHCHKLQSLPYLPKYSGPSNSVGRYFKTTSGSRNHRSGLYIFDSPNCMMMRSSFREYSYQHFIKWVPRLVKNPAHFRCGFDIVLPWHEKTGYGNQIIPKTFHHWFKGGSIVRINDRVMDVDWLGFLFYVKFELSFHPELFCSSHQSPSSSLPHPFYLSFESEFTEERFDMPLNLESNQVDGKHYLWMSYISREHCHFVKTGAQITFKARQGLIIKEWGLRVITKKDTKSSRMKRSVHLSLENVKVKQRSTNSFEPKIQLPYNWFVSDKDEAEGDEAKGKETHLFNLGLSTEIRQ 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01673 1152 Gene3D - 362 445 IPR042197 -
Trre13g01673 1152 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g01673 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 454 IPR027417 -
Trre13g01673 1152 SUPERFAMILY "Winged helix" DNA-binding domain 433 534 IPR036390 -
Trre13g01673 1152 PRINTS Disease resistance protein signature 634 650 - -
Trre13g01673 1152 PRINTS Disease resistance protein signature 303 317 - -
Trre13g01673 1152 PRINTS Disease resistance protein signature 396 410 - -
Trre13g01673 1152 PRINTS Disease resistance protein signature 225 240 - -
Trre13g01673 1152 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 191 - -
Trre13g01673 1152 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
Trre13g01673 1152 Gene3D - 24 195 IPR035897 -
Trre13g01673 1152 Gene3D Ribonuclease Inhibitor 552 724 IPR032675 -
Trre13g01673 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 700 IPR044974 GO:0006952
Trre13g01673 1152 SUPERFAMILY L domain-like 561 869 - -
Trre13g01673 1152 SMART till_3 26 164 IPR000157 GO:0007165
Trre13g01673 1152 Pfam Leucine rich repeat 810 862 IPR001611 GO:0005515
Trre13g01673 1152 Pfam NB-ARC domain 210 433 IPR002182 GO:0043531
Trre13g01673 1152 Gene3D - 197 354 IPR027417 -
Trre13g01673 1152 Gene3D Ribonuclease Inhibitor 725 879 IPR032675 -
Trre13g01673 1152 SMART LRR_typ_2 827 850 IPR003591 -
Trre13g01673 1152 SMART LRR_typ_2 804 826 IPR003591 -
Trre13g01673 1152 ProSiteProfiles TIR domain profile. 25 189 IPR000157 GO:0007165
Trre13g01673 1152 Pfam TIR domain 27 191 IPR000157 GO:0007165
Trre13g01673 1152 Pfam Leucine Rich Repeat 615 634 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01673 Trre-Chr13 13815094 13820257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01673 706 868 WRKY Transcription Factor Family AT4G12020 32.121 1.45e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01673 - - psat:127131100 1372.84