Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01672 ATGCCAAAGCGACAGTTTGGGGATACGCTGGAAGAAGGAAGTACAAGTTCTAGTTCTACTTCTTGTAAGGATTATATATACGATGTGTTTATCAGTTTCAGAGGTCCTGATACGCGCAACAATTTCGTTGACCATCTCCACGCTCATCTAACTAGAAAGGGTATTTTTGTCTTCAAAGATGACAAACAACTTCAGAAAGGTGAATCCATTTCAAGTGAACTTAACCGGGCAATCGAAGATTCACGGGTTTCTATCGTTGTCTTCTCAAAAGATTATGCTACCTCAACTTGGTGTTTAAATGAAATGTTTGATATTTATAATCGCCATCTGGAATCGAAACAAATTGTTTTTCCTGTTTTTTATGATGTCGATCCATCCGATGTCCGAAAACAAAATGGAGTGTATGAAAATGCCTTTGTTTCACACACTGAGACATTCAAAGACGATCCACACAAGGTTGATCAGTGGAAGAGAGCTATGACTTGTTTCGCTGGATTGGCCGGTTGGGATGTCAGGAATAAGAAAGAAGTTGCAGAGATTCAAAATATTGTCCAAGCTGTAATAGGAAAGTTGGGTCATAAGTTTTCAGGGCATGCTGATGATCTTATAGGAATACAACCTCAAGTAAAAACATTAGAAAACCTGTTAAAACTAGGCTCCGATGATGACAAATCCCGAGTTTTAGGAATATGGGGGATGGATGGCATAGGAAAGACAACTCTTGCAACTATCTTGTATGACAGGATATCACATCGCAATCAATTTGATGCTTGCTGTTTTATCGAGAGTGTTAGCAGAATTTATAGCTCTGGCGGGGCTATTGCTGTCCAGAAACAAATTCTTCTTAAAACACTGAGAGAAAAAAATCTTGATGAATACAGTCCCTCTGAAATGTCCGGAATTATAAGACGTAGGCTATATAACATGAAGTTCCTTCTAGTTCTTGAGGATGTTGATAAATATGAGCAACTACAAGAATTGCACATCAATCCCCAATTGCTTTCTCCGGGAAGTAGAATAATCATAACCACTAGAGATGTGCATATTCTTAAATTGTTTGGAGAGCATGAAAGGCACGAGGTTAAATTTATGAATCATGATGATGCTAAAGAACTTCTATGCAGAAAAGCTTTTAAAAGTGATAATTCAAGCAGCGATTATGCAGATCTTATTCCTAAGGTTTTAAAATACGCTGAAGGTCTGCCATTAGCAATTAAAGTATTGGGTTCTTTCTTGTATAGTAGAAATACAACCCAATGGAGAGCTACCTTGAAAGGATTGGAGAATAATCCAAACAGTGGCATTATGAAAGTGCTTCAGTCAAGTTTTGAGGGACTAGATCTAAGAGAGAAAGAAATATTTTTGCACGTTGCTTGCTTCTTTGATGGGGAGAGGAAGGATTATGTAGCCCGAATTCTAGATGCTTGTGGATTGCTGCCTGAAATTAGAATTCCACTTCTTGCTGAAAAGTCGTTCATAACCATTAGAAATGAAGAAATTCATATGCATAAAACGTTGCAAGAGTTGGGAAAGGAAATTGCCCGGGAAGGACATCCTGATGAGCCAAGATTATGGAGTAGATTGTGGCTTTATCGTGATCTCCAAGATGCCATGATTACAAAACTGGAAGCAATAAAAGCTAAAGCCATAATTCTAAATCAAAAGGAGGATGTTTCCAATTTCAATCAGCCAAGGGATGAAGATTTATTGAAATTGGAAAACTTGAAATTGCTCATATTAGATCATTCTAATTTTCGAGGAAGCCCCAAATTTCTTTGTGATTCCCTTTGCTATCTTATGTGGAAAGGTTACCCTTATACGTCTTTTCCATCAAACTTTCAACCATATAATCTTGTTGAATTGAATATGCCTAATAGCAACATTGAACATTTATGGATAAACATCCAGCATCTTCCCAAATTAAAAAGGATGGACCTAAGCAACTCCAAAAATCTGAAGGAGACTCCGTGCTTTGAAATGATACAAAATCTTGAGCGACTGGATTTTACAGGATGTATTAACTTGTTGAAGGTGCATCCATCCATTGGACTTCTTACAAAACTTGAATTCTTGAGTCTGCAGAACTGTACTAGTCTAGTCACCCTTGATTTTGGCAATGAACCAATACGACCGTGCCTCATGAGGTCTTTGAGAGTTCTTCATCTAGCTGGCTGTACAAAACTTGAAAACACTCCGAATTTCTATGGATTATTTGTTCTCCAGTATCTCGATATGGATCAATGTGCAAGTTTATCCACGATTCATGAATCAGTTCGGGGTCTTGCAATGCTTAAATTGATAAGTTTGAGAGACTGCACAAATCTTGCTGAAATACCTGCAGGAATAATGAGACATGTTACAACTCTAGATCTTTGTGGCTGCTCTAAATTGGATAAGCTGCCATTGACTTCCATTTCTATGAAATCTTTAGTTTTTCTAGACTTAAGTTTTTGCAATCTCGGTTATTTACCTAATGCGTTTGGAGAACATTTAAGTTGTTTAGAAAGACTAAATCTTCAGGGAAATAAAATTGGTGAACTTCCCTCCACCTTCAAAAGTCTTCATAATCTATCATATTTAAACTTGTCCCATTGTCATCATTGGCTTGTAAGTTTGGATTTTCTCCCAACAGAAAGTGGTCCATCAAATTCAGTGGGAAGATATTTTGAAACAACATCCGGATCTCGTAATCATAGATCAGGATTATATGTGTTTGATGTTAGCAATCCCACTTCCACTTTCAAGGACAATTGGTTCTACGAGACACACACGACTAATTGGATACTAAGATTACTTAAGGAACCTCTTCACTTTCGATGTGGCTTTGACCTTGTTCTTCCTATGGATGTTAAGCCTTATTTTGCACTCTCTTTCCATCATTGGTTTCAAGGGGGTTCAATAGTAAGGATAAATAACCCTGTTATGGATGACAACTGCCTTGGCTTTCTTTTTATTGTAACATTTGAGTTAAATAATCATCTTAAACAATCTAGTTCTTCCTCACTGCCACATCCTTTTTATCTTTCTTTTGAGAGTGAATACACAGAAGAACGCTTTGATATGCTACTTAATTTGGAATCAAACAAGGTTGATGGCTTAATCTATGGTTGGGTAATCTATATATCTCGGGAACACTGCCATTTTGTGAAAACAGGAGCACACATCACATTTAAAGCCCGCCAAGGTTTGATTATCAAGCAGTGGGGGTTGCGTGCCATGAACAAGGAAGACACAAAGGGCTCAACGATGAGAGTGAGTGTACTTATTCCTTCAGTGGAAGTACTTATTCCTTCAGAGAATGTGAAAGTAAAACAAAGAAACACCAGCAGCTTTGAGCCTAAAATCCAACTTCCTTACAATTGGTTTGTTTCCGACAAAGATGAAGCCGAGAGGGATGAAGCAAAGGGAAAAGAAACTGAACTTTTTAATCTTGGCCTTTTAACTGAAAGTTCACAATGA 3459 0.3758 MPKRQFGDTLEEGSTSSSSTSCKDYIYDVFISFRGPDTRNNFVDHLHAHLTRKGIFVFKDDKQLQKGESISSELNRAIEDSRVSIVVFSKDYATSTWCLNEMFDIYNRHLESKQIVFPVFYDVDPSDVRKQNGVYENAFVSHTETFKDDPHKVDQWKRAMTCFAGLAGWDVRNKKEVAEIQNIVQAVIGKLGHKFSGHADDLIGIQPQVKTLENLLKLGSDDDKSRVLGIWGMDGIGKTTLATILYDRISHRNQFDACCFIESVSRIYSSGGAIAVQKQILLKTLREKNLDEYSPSEMSGIIRRRLYNMKFLLVLEDVDKYEQLQELHINPQLLSPGSRIIITTRDVHILKLFGEHERHEVKFMNHDDAKELLCRKAFKSDNSSSDYADLIPKVLKYAEGLPLAIKVLGSFLYSRNTTQWRATLKGLENNPNSGIMKVLQSSFEGLDLREKEIFLHVACFFDGERKDYVARILDACGLLPEIRIPLLAEKSFITIRNEEIHMHKTLQELGKEIAREGHPDEPRLWSRLWLYRDLQDAMITKLEAIKAKAIILNQKEDVSNFNQPRDEDLLKLENLKLLILDHSNFRGSPKFLCDSLCYLMWKGYPYTSFPSNFQPYNLVELNMPNSNIEHLWINIQHLPKLKRMDLSNSKNLKETPCFEMIQNLERLDFTGCINLLKVHPSIGLLTKLEFLSLQNCTSLVTLDFGNEPIRPCLMRSLRVLHLAGCTKLENTPNFYGLFVLQYLDMDQCASLSTIHESVRGLAMLKLISLRDCTNLAEIPAGIMRHVTTLDLCGCSKLDKLPLTSISMKSLVFLDLSFCNLGYLPNAFGEHLSCLERLNLQGNKIGELPSTFKSLHNLSYLNLSHCHHWLVSLDFLPTESGPSNSVGRYFETTSGSRNHRSGLYVFDVSNPTSTFKDNWFYETHTTNWILRLLKEPLHFRCGFDLVLPMDVKPYFALSFHHWFQGGSIVRINNPVMDDNCLGFLFIVTFELNNHLKQSSSSSLPHPFYLSFESEYTEERFDMLLNLESNKVDGLIYGWVIYISREHCHFVKTGAHITFKARQGLIIKQWGLRAMNKEDTKGSTMRVSVLIPSVEVLIPSENVKVKQRNTSSFEPKIQLPYNWFVSDKDEAERDEAKGKETELFNLGLLTESSQ 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01672 1152 ProSiteProfiles Leucine-rich repeat profile. 833 854 IPR001611 GO:0005515
Trre13g01672 1152 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g01672 1152 Pfam NB-ARC domain 215 440 IPR002182 GO:0043531
Trre13g01672 1152 Gene3D - 364 447 IPR042197 -
Trre13g01672 1152 Pfam TIR domain 27 194 IPR000157 GO:0007165
Trre13g01672 1152 Pfam Leucine Rich Repeat 617 632 IPR011713 -
Trre13g01672 1152 ProSiteProfiles TIR domain profile. 25 191 IPR000157 GO:0007165
Trre13g01672 1152 Gene3D Ribonuclease Inhibitor 735 936 IPR032675 -
Trre13g01672 1152 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 169 IPR035897 -
Trre13g01672 1152 PRINTS Disease resistance protein signature 636 652 - -
Trre13g01672 1152 PRINTS Disease resistance protein signature 398 412 - -
Trre13g01672 1152 PRINTS Disease resistance protein signature 305 319 - -
Trre13g01672 1152 PRINTS Disease resistance protein signature 227 242 - -
Trre13g01672 1152 SMART till_3 26 166 IPR000157 GO:0007165
Trre13g01672 1152 Pfam Leucine rich repeat 810 866 IPR001611 GO:0005515
Trre13g01672 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 456 IPR027417 -
Trre13g01672 1152 Gene3D Ribonuclease Inhibitor 557 734 IPR032675 -
Trre13g01672 1152 SUPERFAMILY "Winged helix" DNA-binding domain 435 534 IPR036390 -
Trre13g01672 1152 Gene3D - 197 358 IPR027417 -
Trre13g01672 1152 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 193 - -
Trre13g01672 1152 Gene3D - 21 196 IPR035897 -
Trre13g01672 1152 SUPERFAMILY L domain-like 566 869 - -
Trre13g01672 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 732 IPR044974 GO:0006952
Trre13g01672 1152 SMART LRR_typ_2 807 830 IPR003591 -
Trre13g01672 1152 SMART LRR_typ_2 831 853 IPR003591 -
Trre13g01672 1152 SMART LRR_typ_2 572 595 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01672 Trre-Chr13 13788416 13808157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01672 714 879 WRKY Transcription Factor Family AT4G12020 27.976 5.74e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01672 - - mtr:25498786 1340.48