Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01663 ATGACTGATGCAAATGTTGCTGCATTTGAGGAATTTATCCATGGTTGGATAATTCGTCAAAGAAACTATCTTGATGAACTTATATCAGCTCAAGTTCAACAACAGCAACAAGAGTTAGCTGATTCTGATAGATTGAATTTGTTAAACAGAGTACTCTGCCACTATGGACAATACTATGAAGAAAAATCAAAGATAGCCCATCAAAATATTCTCCTTCTTTTCTCACCACCATGGTTTAGTTCATTAGAAAGAACGTTTCTTTGGGTGGCAGGGTTCAAACCAGGACTTGCATTTCAACTTGTGAACAAAACTTTGGAGGATTTGTCAGAGGATCAGAGGCAAAGATTGAGTAAACTCAAACAAGAGACTAAGATGAAGGAGAGAGAACTCAATGATGAATTAGCTAAGGTTCATGAGAGTATGGCAGGTCCACCTCTTGTTGACATGATTAGAAGCCATGGAAGGGTGTGTTTGAGTAGGTCATTCATGGCAGAGGAAGGTACAGTTCCAAGTACAGTGAAGGAAACATTGGAGAATTTGGTAACAAATGCTGATACTTTGAGGACTGAGACAGCTTTGAGAGTTGTGAAGATATTGAAACCAGCTCAGGTTCTCAACTTTTTTGTTGCTGTGGCTGAACTTCAACTTAGGATCAGGTCTTTGGGTTTGGATAAGGATGCTCAGAGTGGAAACCAAAGTTGA 702 0.3932 MTDANVAAFEEFIHGWIIRQRNYLDELISAQVQQQQQELADSDRLNLLNRVLCHYGQYYEEKSKIAHQNILLLFSPPWFSSLERTFLWVAGFKPGLAFQLVNKTLEDLSEDQRQRLSKLKQETKMKERELNDELAKVHESMAGPPLVDMIRSHGRVCLSRSFMAEEGTVPSTVKETLENLVTNADTLRTETALRVVKILKPAQVLNFFVAVAELQLRIRSLGLDKDAQSGNQS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01663 233 ProSiteProfiles DOG1 domain profile. 6 228 IPR025422 GO:0006351|GO:0043565
Trre13g01663 233 Pfam Seed dormancy control 25 102 IPR025422 GO:0006351|GO:0043565
Trre13g01663 233 Coils Coil 102 136 - -
Trre13g01663 233 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 8 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01663 Trre-Chr13 13732482 13733183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01663 3 222 Calmodulin-binding Proteins AT1G77920 27.313 1.73e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01663 - - gmx:100780874 338.961