Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01659 ATGGAGGGTCATCATCTCCATCATCATCATCAACAACATCAACAACAACATCATCAACAACAACATAGACAACAACAACAACAACAACAACAACATCAACAACATGCTCATAACATAATAGGTACTAGTGGTGTGAACGTTGATGTCACAGATAGATTTCCTCAATGGAGCATCCAAGAAACAAAAGAGTTTCTTATGATCCGTTCTGAGCTTGATCAAACTTTCATGGAGACAAAGAGGAACAAGCAACTTTGGGAAGTTATTTCTAACAATATGAAGGAAAAGGGTTATCATAGAAGTGCTGAACAGTGTAAGTGCAAGTGGAAAAACCTTGTTACTCGATATAAGGGATGTGAAACAATGGAACTAGAAGCTATGAGACAACAATTTCCATATTACAATGAGCTTCAAGCTATTTTTAGTGCAAGAATGCAAAGAATGCTATGGGCTGAAGCAGAAGGAGGGTCAAAGAAGAAAGGGATGCATGTGTCTTCTGAGGATGAGGAAGAGTTAGGAAATGAAGAGAGTGAGGGAGATCACAAAGGCAACATTAAGAAAAAGAAGAAAAAGGGTAAAATGGTAATTGGTGGAGGAAATGATAGTGGTAGTAGTAGCAACAATTTGAAGGAGATTCTTGAGGAGTTTATGAAGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGAGAGAATGAGAGAAGGTTGAAGGAAATGGAATGGAGACAAACCATGGAAGCATTGGAGAATGAAAGGATAATGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGGTTAGAGAAGAAGCTAGGGCTGAAAAGAGAGATGCATTAATCACTGCTCTTCTTGATAAGCTCACAAGAGAAGACATGTAG 891 0.3861 MEGHHLHHHHQQHQQQHHQQQHRQQQQQQQQHQQHAHNIIGTSGVNVDVTDRFPQWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMELEAMRQQFPYYNELQAIFSARMQRMLWAEAEGGSKKKGMHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMVIGGGNDSGSSSNNLKEILEEFMKQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMEQRWREREEQRRVREEARAEKRDALITALLDKLTREDM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01659 296 Coils Coil 241 268 - -
Trre13g01659 296 Gene3D - 56 117 - -
Trre13g01659 296 MobiDBLite consensus disorder prediction 1 17 - -
Trre13g01659 296 Pfam Myb/SANT-like DNA-binding domain 55 139 IPR044822 -
Trre13g01659 296 PANTHER FI21293P1 10 293 - -
Trre13g01659 296 MobiDBLite consensus disorder prediction 153 167 - -
Trre13g01659 296 MobiDBLite consensus disorder prediction 153 206 - -
Trre13g01659 296 CDD GT1 54 119 - -
Trre13g01659 296 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g01659 296 MobiDBLite consensus disorder prediction 18 36 - -
Trre13g01659 296 ProSiteProfiles Myb-like domain profile. 56 112 IPR001005 -
Trre13g01659 296 FunFam Zinc finger and SCAN domain-containing 20 56 117 - -
Trre13g01659 296 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01659 Trre-Chr13 13681464 13682995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01659 31 294 Trihelix Transcription Factor Family AT2G38250 53.791 1.90e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g01659 Myb_DNA-bind_4 4.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01659 - - tpra:123892994 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01659 13 13681464 13682995 Trre13g01659 13 13681464 13682995 ECH