Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01649 ATGGGTTCCACTCGCACTGATAGCTATGCCACAAACAAAGAACGCTTAAGATGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGATAGGGCAACACCAAAGGGCATATTGAAGGTAATGACGGCTATGGGAATTTCAGAGTTGAGTATTTATCATGTCAAAAGTCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCACTACAAGAGGAAAGATTGAGAAGAAAAACATATCAGATATACTGCCAAATTTCTGTTCTATATCTGCTGTTCAGCTAAAGGAAGTCCTTCAAATGCAAGCAGAGGTGCAAAATCGCATGGATGACAGAATTGAGGTTCAAAAAATGCTGAAGCTGAAAATTGAAGCACAAGGAAAGTACCTAGACAGATTTGGACAAAGTAATCAAAGCAAAACAATTACAAGAAAAGCTTGCAAACCTTTTGTTGGCAAAGCTACACCTCTTCCCTCTCTTTCTGAGGAACATGAATCCTTAAAAACACAATCTGAGAAAGAACATCAAGCAACTAAAAAGCTAAAGATAAGAGATGAGGATGTTTTTCCTATAGATTTTGAACTAGGATCATCAACAATGTCGGAATTCTGCAACCAAACTTGGAACAATCTTTCCTGGATTCAGCTGGCTGAAGCAACATGCCAATCACCTTTGGTGCCTAGTTTCTTATTATAA 720 0.3917 MGSTRTDSYATNKERLRWTQQLHDLFVEAVNRLGGPDRATPKGILKVMTAMGISELSIYHVKSHLQKYRISKLIPESTTRGKIEKKNISDILPNFCSISAVQLKEVLQMQAEVQNRMDDRIEVQKMLKLKIEAQGKYLDRFGQSNQSKTITRKACKPFVGKATPLPSLSEEHESLKTQSEKEHQATKKLKIRDEDVFPIDFELGSSTMSEFCNQTWNNLSWIQLAEATCQSPLVPSFLL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01649 239 MobiDBLite consensus disorder prediction 162 187 - -
Trre13g01649 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Trre13g01649 239 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 175 IPR044848 GO:0003700
Trre13g01649 239 FunFam Two-component response regulator 10 73 - -
Trre13g01649 239 Gene3D - 12 73 - -
Trre13g01649 239 Pfam MYB-CC type transfactor, LHEQLE motif 101 140 IPR025756 -
Trre13g01649 239 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Trre13g01649 239 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Trre13g01649 239 MobiDBLite consensus disorder prediction 173 187 - -
Trre13g01649 239 SUPERFAMILY Homeodomain-like 10 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01649 Trre-Chr13 13532738 13536597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01649 10 138 G2-like Transcription Factor Family AT4G28610 48.889 3.04e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g01649 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01649 - - psat:127127459 379.407