Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01648 ATGCCAGAACCACATTCCTCCACCGCCATTGCTTCTTCTTCCACTTCCAACGATGAAACTTCTCAATCAAACCAAAACGCTGAAATATCGGAGAACCGTTCACGCCAGTCTCGGCGCGTGACCATCACCTACGGGAGATTCAACCGGAGATTGAGTATCACTGATGACTCCTCCGTTAGGGATGATAATTGGTCCTGTTTGGCCGTTATCTTCAGCCTTTGGTTCTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGCGTGGCTCTAGGCCCATGTTCTTCAATTGTTTTTCAACCTAACCCTGTGTTTGTGCAATACGTGAAGGTAGAAAACTTACAGGCAAATCCAGGACTCATTCTTTATGGTACATATCAATATCCATCTCTTGACGTTGTTTCCACTTGGAGAGAAACTTATAATATATCTGTTCCTTATGGCTCAGAAAAGGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTGAATATTTCGTATAGCTTGAGCTCTGTGAACTCCTCTATTTATCTTGTAATTGCAGAAGGAGCTGAAAGCCTCTCAGTGTGGCTTGCTGACCCAACATATCCAAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCAGGTCATCTAGCTATTATGTGGCATTGGGTAATTTGGAGCAAGAGGAAGTGGAGGTGGAATTAAACCTCACTGTAAAGGCCTTCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTAGTCCATGTAGTCTGAATATTTTCTTTCCTGGTGGAAACGCAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCGAACTGTCTTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGATTGACTTTGATTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTTCAGAGTGCCCATGATGATCGAGTAGCATCTAGATCTGAAGTAACGGGTCCTGATCAAGCCCCTTTGCTTTCTCGCAAAGATGACGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCGCAGGATGAGGAGGATCTTGATTTTCTCGCCGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGAATGTGGAACTAGGATAGCTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTATGA 1359 0.4312 MPEPHSSTAIASSSTSNDETSQSNQNAEISENRSRQSRRVTITYGRFNRRLSITDDSSVRDDNWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFQPNPVFVQYVKVENLQANPGLILYGTYQYPSLDVVSTWRETYNISVPYGSEKEWKYYLNRGSEVNISYSLSSVNSSIYLVIAEGAESLSVWLADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEQEEVEVELNLTVKAFLHNTTNAYYKCALTSSSPCSLNIFFPGGNAAVLVSPAPQQNTSNEEWYVELSYGPRWLTYIFGIGGLTLIMFWAFNFLNKLQSAHDDRVASRSEVTGPDQAPLLSRKDDDLSSWGSSYDSLPQDEEDLDFLAGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01648 452 ProSiteProfiles Zinc finger RING-type profile. 401 440 IPR001841 -
Trre13g01648 452 FunFam E3 ubiquitin-protein ligase APD2 390 451 - -
Trre13g01648 452 SUPERFAMILY RING/U-box 400 446 - -
Trre13g01648 452 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g01648 452 SMART ring_2 401 439 IPR001841 -
Trre13g01648 452 MobiDBLite consensus disorder prediction 337 369 - -
Trre13g01648 452 Pfam Zinc finger, C3HC4 type (RING finger) 398 446 - -
Trre13g01648 452 Pfam Domain of unknown function (DUF4793) 213 320 IPR032010 -
Trre13g01648 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 452 IPR013083 -
Trre13g01648 452 PANTHER OS05G0521000 PROTEIN 57 452 - -
Trre13g01648 452 Pfam Domain of unknown function (DUF4792) 121 189 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01648 Trre-Chr13 13519378 13525044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01648 374 449 C3H Transcription Factor Family AT3G06140 30.263 4.95e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01648 - - tpra:123891971 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01648 13 13519378 13525044 Trre13g01648 13 13519378 13525044 ECH