Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01647 ATGCCAGAACCACATTCCTCCACCGCCATTGCTTCTTCTTCCACTTCCAACGATGAAACTTCTCAATCAAACCAAAACGCTGAAATATCGGAGAACCGTTCACGCCAGTCTCGGCGCGTGACCATCACCTACGGGAGATTCAACCGGAGATTGAGTATCACTGATGACTCCTCCGTTAGGGATGATAATTGGTCCTGTTTGGCCGTTATCTTCAGCCTTTGGTTCTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGCGTGGCTCTAGGCCCATGTTCTTCAATTGTTTTTCAACCTAACCCTGTGTTTGTGCAATACGTGAAGGTAGAAAACTTACAGGCAAATCCAGGACTCATTCTTTATGGTACATATCAATATCCATCTCTTGACGTTGTTTCCACTTGGAGAGAAACTTATAATATATCTGTTCCTTATGGCTCAGAAAAGGCAAGTATATATGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTGAATATTTCGTATAGCTTGAGCTCTGTGAACTCCTCTATTTATCTTGTAATTGCAGAAGGAGCTGAAAGCCTCTCAGTGTGGCTTGCTGACCCAACATATCCAAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCAGGTCATCTAGCTATTATGTGGCATTGGGTAATTTGGAGCAAGAGGAAGTGGAGGTGGAATTAAACCTCACTGTAAAGGCCTTCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTAGTCCATGTAGTCTGAATATTTTCTTTCCTGGTGGAAACGCAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCGAACTGTCTTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGATTGACTTTGATTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTTCAGAGTGCCCATGATGATCGAGTAGCATCTAGATCTGAAGTAACGGGTCCTGATCAAGCCCCTTTGCTTTCTCGCAAAGATGACGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCGCAGGATGAGGAGGATCTTGATTTTCTCGCCGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGAATGTGGAACTAGGATAGCTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTATGA 1371 0.4296 MPEPHSSTAIASSSTSNDETSQSNQNAEISENRSRQSRRVTITYGRFNRRLSITDDSSVRDDNWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFQPNPVFVQYVKVENLQANPGLILYGTYQYPSLDVVSTWRETYNISVPYGSEKASIYEWKYYLNRGSEVNISYSLSSVNSSIYLVIAEGAESLSVWLADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEQEEVEVELNLTVKAFLHNTTNAYYKCALTSSSPCSLNIFFPGGNAAVLVSPAPQQNTSNEEWYVELSYGPRWLTYIFGIGGLTLIMFWAFNFLNKLQSAHDDRVASRSEVTGPDQAPLLSRKDDDLSSWGSSYDSLPQDEEDLDFLAGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01647 456 SUPERFAMILY RING/U-box 404 450 - -
Trre13g01647 456 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g01647 456 MobiDBLite consensus disorder prediction 341 373 - -
Trre13g01647 456 PANTHER OS05G0521000 PROTEIN 57 456 - -
Trre13g01647 456 Pfam Domain of unknown function (DUF4792) 121 193 IPR032008 -
Trre13g01647 456 ProSiteProfiles Zinc finger RING-type profile. 405 444 IPR001841 -
Trre13g01647 456 Pfam Domain of unknown function (DUF4793) 217 324 IPR032010 -
Trre13g01647 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 456 IPR013083 -
Trre13g01647 456 FunFam E3 ubiquitin-protein ligase APD2 394 455 - -
Trre13g01647 456 Pfam Zinc finger, C3HC4 type (RING finger) 402 450 - -
Trre13g01647 456 SMART ring_2 405 443 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01647 Trre-Chr13 13519378 13525044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01647 378 453 C3H Transcription Factor Family AT3G06140 30.263 5.30e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01647 - - tpra:123891971 799.275