Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01644 ATGCTGGAAAAAAATGATTCTCCGTCCCCTGATATTTGTTTGATCCATGATTCTAATGGATTGAGCGAAGAAGAAGATTTTCTCAAAGTCACGCCAAGGATAACCATTGAGGGGTTGAAAGAAAGTCGTGGGCAATCGTCTTACATTGTCTTGGGAACAATCAAAGGCTTGCTTGATACACATGGGTGGTGGTACACTGCATGTGAGTGTAACAAAAAAGTTATTCTTGATGAGGGCATGTACTATTGTTCTAAATGTAATAAACATGTGACCCATGTTAGCGAAAGGTACAGAATCAATGTCTCTGTAATTGATTCAACCGACTCTGCCACATTCGTCATTTTTGACCGTGAAGCAACAAAATTGTTCAAAAAAAATGTGTCTCAAATGATTGAGAGTTCTGCGGAAAAATCGTCTGCAATCCTACCTAAAGACATTTCTGGGTTGATTGATTCTACATTTTTGTTCAAGGTTGAGTCTAACCTCAATAGTGACACTAGGTTTGAAACATCTTATAGAGTGAAGAAAATTTGCAATACCGAAAATATTATTGTGAAGTTCAAGGAGACAGAATCTAACACTAATTATATGGCTTCCATGGGTTCTTCAAATTCAGCTGACACTATCATCGATAAAGGAAAATTTGCAAATGTTGATATTGCACAGGATTTGTTGAATAAGTTTGATGATGCTGTCAAGTCTCCAAAGATATCGGATGCTATTGAAGCAATAGATTTAACTTCGGAATCAGACAATATTACCCCTTTCAAAAGGTCTTATCCGTTTGGCGAAGAAAATTCAACCAATCCAAATTCAAACATGTTGAAGAACATCAAGATTGAAAAGAATTGA 852 0.3638 MLEKNDSPSPDICLIHDSNGLSEEEDFLKVTPRITIEGLKESRGQSSYIVLGTIKGLLDTHGWWYTACECNKKVILDEGMYYCSKCNKHVTHVSERYRINVSVIDSTDSATFVIFDREATKLFKKNVSQMIESSAEKSSAILPKDISGLIDSTFLFKVESNLNSDTRFETSYRVKKICNTENIIVKFKETESNTNYMASMGSSNSADTIIDKGKFANVDIAQDLLNKFDDAVKSPKISDAIEAIDLTSESDNITPFKRSYPFGEENSTNPNSNMLKNIKIEKN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01644 283 SUPERFAMILY Nucleic acid-binding proteins 32 178 IPR012340 -
Trre13g01644 283 CDD RPA1_DBD_C 37 177 IPR047192 -
Trre13g01644 283 MobiDBLite consensus disorder prediction 260 283 - -
Trre13g01644 283 MobiDBLite consensus disorder prediction 260 277 - -
Trre13g01644 283 Gene3D - 16 188 IPR012340 -
Trre13g01644 283 Pfam Replication factor-A C terminal domain 58 162 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01644 Trre-Chr13 13472549 13473871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01644 64 123 Core DNA Replication Machinery Family AT5G08020 42.857 1.89e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01644 - - mtr:25497071 260.381