Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01623 ATGGCTTCTCGCCAAATAACACAAGAACAACCATGGCTTTTGGAGAATGGTGATCAGAAGCGCTTGACCAAGGAAGCAAGACATGGACATGGGCGGAGCAGAACCGCGCATGGCATGTCTGCGACTTCCTTGCGCAAGAAATCCGATCACACTCTTGTGTCGAGGGTTCGATGTGCTTCCCTTCGGAATGTCTTGGTTAACATCACAGAAGTTATTTTTGGTACCAAGCTGTCCATTCTCTTTCCTGCCATTCCTGCTGCCATCATTGCCCATTACTTAGGCATAGGACAATCATGGGTTTTCATTCTGAGTTTGCTTGGCCTCACACCACTTGCTGAACGTGTGAGCTTCCTCACAGAACAAATTGCTGTGTTCACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGCTGATTATAGCAATCTTTGCTCTTAAAAGCAATCAAATTGCTGTTGTCAAATATTCACTTTTAGGTTCAATCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTTCTTTGTGGTGGCATTGCAAACATTGGAGATGAGCAAAAATATGACAGAAGACAAGCAGATATGAACTCACTGATGCTACTATTGGCATTGTTATGTCATTTGCTTCCATTGCTATTCACATACAGTGCTGCATCAGCTGAACTCACAGCAGAACCTTCACTCTATTTGTCAAGAGCTGCTAGCATTGTGATGCTGGGCGCGTATTTTGCGTACTTGATCTTTCAACTATGGACACATAGGCAATTGTTCGAAGCTGAAGATGAAGGTGAAGGTGAGAACAATGAGGCAGAAGAAGAAGCTGTGATTGGATTCTGGAGTGCATTTGCTTGGTTGGCTGGAATGACTGTTTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGAGTCATGGGGTTTGTCTGTCAGCTTCCTCAGCATAATCTTACTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTACCTTAGGTGTTGCATTGGGTTCTGCTACTCAAATTGCAATGTTTGCGGTTCCTCTATGTGTAACTATTGCTTGGATAATGGGTGTGAAAATGGACTTGAACTTCAACCTTCTTGAGACAGGTTCTCTTGCTTTGGCAATTATTGTCACTGGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCCTACTTTGCTACCTTGTTATTGGTGCTTGTTTCTTTGTGCAAAAATCACCCATTAACCCAAATAATGTTCCTAACAATATCACTCTCAAATCAGTCACTGATTCAGTTTTAAGTGCCTAA 1371 0.4245 MASRQITQEQPWLLENGDQKRLTKEARHGHGRSRTAHGMSATSLRKKSDHTLVSRVRCASLRNVLVNITEVIFGTKLSILFPAIPAAIIAHYLGIGQSWVFILSLLGLTPLAERVSFLTEQIAVFTGPTVGGLLNATCGNITELIIAIFALKSNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIGDEQKYDRRQADMNSLMLLLALLCHLLPLLFTYSAASAELTAEPSLYLSRAASIVMLGAYFAYLIFQLWTHRQLFEAEDEGEGENNEAEEEAVIGFWSAFAWLAGMTVFIALLSEYVVDTIEDASESWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIAMFAVPLCVTIAWIMGVKMDLNFNLLETGSLALAIIVTGFTLQDGTSHYMKGLVLLLCYLVIGACFFVQKSPINPNNVPNNITLKSVTDSVLSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01623 456 NCBIfam calcium/proton exchanger 83 429 IPR004798 GO:0006816|GO:0015369
Trre13g01623 456 NCBIfam calcium/proton exchanger 63 429 - -
Trre13g01623 456 FunFam Vacuolar cation/proton exchanger 128 272 - -
Trre13g01623 456 FunFam Vacuolar cation/proton exchanger 274 430 - -
Trre13g01623 456 Gene3D - 128 268 IPR044880 -
Trre13g01623 456 Gene3D - 273 430 IPR044880 -
Trre13g01623 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 434 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre13g01623 456 Pfam Sodium/calcium exchanger protein 99 256 IPR004837 GO:0016020|GO:0055085
Trre13g01623 456 Pfam Sodium/calcium exchanger protein 286 424 IPR004837 GO:0016020|GO:0055085
Trre13g01623 456 MobiDBLite consensus disorder prediction 17 46 - -
Trre13g01623 456 Coils Coil 455 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01623 Trre-Chr13 13287509 13292006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01623 10 434 Antiporters AT2G38170 67.209 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01623 K07300 - gmx:100779440 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01623 13 13287509 13292006 Trre13g01623 13 13287509 13292006 ECH
Trre13g01623 13 13287509 13292006 Trre7g00457 7 2863522 2868116 PCT