Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01622 ATGGCTTCTTGCCAAATAGCACAAGAACAACAACCTTGGCTTTTGGAAAATGGTAATCCAAAGGTCTTGACCAAGGAATCAAGACATGGACGGAGCCGAAACGCACATAACCTTTCTACGTCTTCGTTGCGCAAGAAATCCGATTATACTCTTTTGTCGAAGGTTCAACGTGCTTCATTTCAGAATGTCTTGCTTAACATCCAAGAAGTTATTCTTGGTACCAAGCTGTCTATTCTCTTCCTTGCCATTCCTGCTGCCATCCTTGCTCATTACTTTGGCTTAGGAAGATCATGGGTTTTCATACTGAGCTTACTTGGCCTTACTCCACTTGCAGAACGTGTGAGCTTCCTTACAGAACAAATTGCCTTCTCCACTGATCCTACTGTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAACTGATAATAGCAATATTTGCTCTTAGCAGCAACCAAATTGCTGTGGTCAAGTATTCTCTTTTAGGCTCCATCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTTCTTTTTGGCGGCATTGCAAACCTTGGAGTGGAGCAAAAATATGACAAAAGACAGGCAGATGTGAATTCACTGATGCTTCTATTGGCATTGTTATGCCATTCGCTTCCATTGCTATTCACATACAGTGCTGCATCACCTGAACTCGCAGTAGAACCTACACTCTACTTGTCAAGAACTGCTAGCATTGTGATGTTGGGTGCATATGTTGTTTATTTGATCTTTCAACTATGGACACATAGGCAATTATTTGAAGCTGAAGTTGAAGGTGAAGGTGAGAACAATGAGGCAGAAGAAGAGGCTGTGATTGGATTCTGGAGTGCATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTCAGTTTCCTAAGCATAATCTTGCTACCAATAGTTGGTAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTTCCTTAGGTGTTGCATTGGGATCTGCTACTCAAATTGCAATGTTTGTGGTTCCACTCTGTGTAACTGTTGCTTGGATAATGGGTGTAAAAATGGACTTGAACTTCAACCTTCTTGAGACAGGTTCTCTTGCTTTGGCAATTATTGTCACTGGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTATTCTCCTACTTTGCTACTTTGTTATTGGTGCTTGTTTCTTTGTGCAAAGAACACCCATTAACCAAAATGATGTTCCTAACTTCACTATTAAATCAGTCACTGATTCAGTTTTAAGCACCTAA 1365 0.4103 MASCQIAQEQQPWLLENGNPKVLTKESRHGRSRNAHNLSTSSLRKKSDYTLLSKVQRASFQNVLLNIQEVILGTKLSILFLAIPAAILAHYFGLGRSWVFILSLLGLTPLAERVSFLTEQIAFSTDPTVGGLLNATCGNITELIIAIFALSSNQIAVVKYSLLGSILSNLLLVLGTSLLFGGIANLGVEQKYDKRQADVNSLMLLLALLCHSLPLLFTYSAASPELAVEPTLYLSRTASIVMLGAYVVYLIFQLWTHRQLFEAEVEGEGENNEAEEEAVIGFWSAFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVTVAWIMGVKMDLNFNLLETGSLALAIIVTGFTLQDGTSHYMKGLILLLCYFVIGACFFVQRTPINQNDVPNFTIKSVTDSVLST 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01622 454 Gene3D - 278 429 IPR044880 -
Trre13g01622 454 Gene3D - 126 277 IPR044880 -
Trre13g01622 454 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 30 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre13g01622 454 FunFam Vacuolar cation/proton exchanger 273 429 - -
Trre13g01622 454 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016020|GO:0055085
Trre13g01622 454 Pfam Sodium/calcium exchanger protein 285 423 IPR004837 GO:0016020|GO:0055085
Trre13g01622 454 NCBIfam calcium/proton exchanger 62 428 - -
Trre13g01622 454 NCBIfam calcium/proton exchanger 80 428 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01622 Trre-Chr13 13280397 13283844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01622 11 433 Antiporters AT2G38170 67.674 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01622 K07300 - gmx:100779440 647.506