Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01620 ATGGCAACTTCAAAGATTGCAAATGGAAACGGTTCAAGTGAGACTAAGGGAAAGACCATAACTTGTAAAGCCGCCGTGGCACATGGTCCGGGAGAACCCTTTGTCGTCGAGCAAATTCTTGTGCACCCTCCTCAAAAAATGGAGGTTCGAATCAAGATCCTCTATACTTCCATTTGTCACACCGATCTCAGCGGTTGGCGAGGCGAGTCTGAACCTCAACGTGCTTATCCTCGAATTTTTGGACATGAAGCATCCGGGGTTGTAGAGAGTGTGGGAGAAGGAGTGGTTGACATAAAAGAAAATGACATAGTAGTCCTAATCTTCAATGGTGAGTGTGGTGAGTGTTGCTATTGTACTTGTGAGAAAACCAACATGTGTGAGAAGTTTGGGGTAGACCCAATGAAGAGGTTAATGTGTGATGGTACAAGTAGATTTTCAACAATTGATGGCAAACTCATTTACCATTTCTTGAACACTTCAACTTTCACGGAGTATACGGTGGTGGATTCAGGTTGTGTTGTTAAGGTCAACCCTCAAGACACTCTTAGCCTTAAAAACCTCACTTTGCTTAGTTGTGGAGTTTCCACAGGAATTGGAGCTGCTTGGAATACTGCTAATGTGCATGCTGGTTCATCTGTAGCAGTCTTTGGTTTAGGTGCAGTTGGGCTTGCAGTTGCAGAAGGGGCACGAGCCAGAGGTGTTTCCAAAATAATAGGTGTGGATATCAACCCAGAAAAATTCATCACAGCCAAAGAAATGGGAATCACAGACTTCATAAATCCAACTGATGAAGAGAAACTGGTATATGAGAGAATCAGAGAAATGACTGGGGGAGGAGGTGTAGACTACAGTTTTGAATGTACAGGAAACTTGAATGTTCTAAGAGATGCCTTCTTATCTGTTCATGAGGGTTGGGGATTGGCTGTACTATTGGGAATTCATTCATCACCAAAGTTGCTACCGATTCACCCGATGGAGCTCTTTGATGGTCGCAGAATCGAAGGATCAATTTTTGGAGGTTTCAAAGGCAAAAGCCAGTTGCCTCATCTTGCCACAGAATGCATGCAAGGGGTTATAAAGCTGGAAAAGTTCATCACCCACGAACTTCCGTTTGAGGAGATAAACAAAGCCTTCGAGCTTTTGATTGCAGGGAAATCGCTGAGATGTCTTCTGCACCTCTAA 1182 0.4382 MATSKIANGNGSSETKGKTITCKAAVAHGPGEPFVVEQILVHPPQKMEVRIKILYTSICHTDLSGWRGESEPQRAYPRIFGHEASGVVESVGEGVVDIKENDIVVLIFNGECGECCYCTCEKTNMCEKFGVDPMKRLMCDGTSRFSTIDGKLIYHFLNTSTFTEYTVVDSGCVVKVNPQDTLSLKNLTLLSCGVSTGIGAAWNTANVHAGSSVAVFGLGAVGLAVAEGARARGVSKIIGVDINPEKFITAKEMGITDFINPTDEEKLVYERIREMTGGGGVDYSFECTGNLNVLRDAFLSVHEGWGLAVLLGIHSSPKLLPIHPMELFDGRRIEGSIFGGFKGKSQLPHLATECMQGVIKLEKFITHELPFEEINKAFELLIAGKSLRCLLHL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01620 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
Trre13g01620 393 PANTHER ALCOHOL DEHYDROGENASE 17 390 - -
Trre13g01620 393 SUPERFAMILY GroES-like 15 216 IPR011032 -
Trre13g01620 393 FunFam Alcohol dehydrogenase 6 25 209 - -
Trre13g01620 393 SUPERFAMILY GroES-like 343 392 IPR011032 -
Trre13g01620 393 Pfam Zinc-binding dehydrogenase 220 340 IPR013149 -
Trre13g01620 393 Gene3D - 197 336 - -
Trre13g01620 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 182 357 IPR036291 -
Trre13g01620 393 FunFam S-(hydroxymethyl)glutathione dehydrogenase 197 336 - -
Trre13g01620 393 Gene3D - 26 389 - -
Trre13g01620 393 Pfam Alcohol dehydrogenase GroES-like domain 48 174 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01620 Trre-Chr13 13252913 13264250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01620 48 347 Monolignol Biosynthesis Gene Families AT2G21730 28.571 3.70e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01620 K00001 - gmx:100819896 573.548