Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01617 ATGCGCAAGTCTTTCAAAGATTCTCTCAAAGCTCTTGAAGCTGACATCCATTTTGCCAATACACTAGCTTCTGACTATCCAAGTGATCTGGATGGCGCCTGCGTTCAGATGAGATTGTCTTATAGCCCAGCTGCCCATTTGTTTCTTTTTCTTGTTCAGTGGACTGACTGTCAACTCGCCGGAGCCTTAGGATTGCTAAAAATTCTTATATACAAGGCATACAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCTTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTGTGTGCTACTAGATACAAACCTAAAGATGTGGTAGACAAAGGAAAGAGCTGTGAAATTCATACACAGAGAGAAGAAGAGTGTGATATTTGCATGGAGATGAACACCATCGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGGTCTGAATCTTGCCCTTTCTGTAGAGACAGTCTAAAAAGAGTAAACTCTGGTGATCTTTGGATGTACATGAGAAGCAATGAGATAGATGATCTTGCTTCAATCAACAAAGAGAATTTAAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTGCTAGACCATATATTCACATGCTATCATCACATCTTGTGGTTGCTTCTTAG 735 0.3918 MRKSFKDSLKALEADIHFANTLASDYPSDLDGACVQMRLSYSPAAHLFLFLVQWTDCQLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATRYKPKDVVDKGKSCEIHTQREEECDICMEMNTIVVLPNCNHSMCMKCYRDWHARSESCPFCRDSLKRVNSGDLWMYMRSNEIDDLASINKENLKRLFMYIEKLPLVARPYIHMLSSHLVVAS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01617 244 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Trre13g01617 244 FunFam RING/U-box superfamily protein 127 193 - -
Trre13g01617 244 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Trre13g01617 244 SUPERFAMILY RING/U-box 136 189 - -
Trre13g01617 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Trre13g01617 244 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Trre13g01617 244 SMART ring_2 146 183 IPR001841 -
Trre13g01617 244 PANTHER RING FINGER PROTEIN 41, 151 3 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01617 Trre-Chr13 13205817 13209324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01617 94 188 C3H Transcription Factor Family AT5G01960 30.000 1.08e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01617 K25840 - gmx:100814293 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01617 13 13205817 13209324 Trre13g01617 13 13205817 13209324 ECH