Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01616 ATGGGGTTTGTTCTGAAAAAAAACAAGAAGAAGGAATTAGAAAAAAAAGGAAAAATAGATATCATGCGCAAGTCTTTCAAAGATTCTCTCAAAGCTCTTGAAGCTGACATCCATTTTGCCAATACACTAGCTTCTGACTATCCAAGTGATCTGGATGGCGCCTGCGTTCAGATGAGATTGTCTTATAGCCCAGCTGCCCATTTGTTTCTTTTTCTTGTTCAGTGGACTGACTGTCAACTCGCCGGAGCCTTAGGATTGCTAAAAATTCTTATATACAAGGCATACAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCTTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTGTGTGCTACTAGATACAAACCTAAAGATGTGGTAGACAAAGGAAAGAGCTGTGAAATTCATACACAGAGAGAAGAAGAGTGTGATATTTGCATGGAGATGAACACCATCGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGGTCTGAATCTTGCCCTTTCTGTAGAGACAGTCTAAAAAGAGTAAACTCTGGTGATCTTTGGATGTACATGAGAAGCAATGAGATAGATGATCTTGCTTCAATCAACAAAGAGAATTTAAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTGCTAGACCATATATTCACATGCTATCATCACATCTTGTGGTTGCTTCTTAG 798 0.3822 MGFVLKKNKKKELEKKGKIDIMRKSFKDSLKALEADIHFANTLASDYPSDLDGACVQMRLSYSPAAHLFLFLVQWTDCQLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATRYKPKDVVDKGKSCEIHTQREEECDICMEMNTIVVLPNCNHSMCMKCYRDWHARSESCPFCRDSLKRVNSGDLWMYMRSNEIDDLASINKENLKRLFMYIEKLPLVARPYIHMLSSHLVVAS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01616 265 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Trre13g01616 265 Pfam Zinc finger, C3HC4 type (RING finger) 164 210 - -
Trre13g01616 265 SUPERFAMILY RING/U-box 157 210 - -
Trre13g01616 265 SMART ring_2 167 204 IPR001841 -
Trre13g01616 265 FunFam RING/U-box superfamily protein 148 214 - -
Trre13g01616 265 PANTHER RING FINGER PROTEIN 41, 151 24 250 - -
Trre13g01616 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 213 IPR013083 -
Trre13g01616 265 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01616 Trre-Chr13 13205817 13209387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01616 115 209 C3H Transcription Factor Family AT5G01960 30.000 1.24e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01616 K25840 - gmx:100814293 392.889