Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01615 ATGACAAAGGGCAAGGGAACAGGAAAGACTTCTAGGGAAGTATTGAAACCTGTTGATGACCGAAAGGTAGGAAAGCGAAAGGCAGCTTCTAAACCTGAGAAGAGCAGTGCACCAAAGACGACTAAGAAGGACAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCAAGCGCTTTCTTCGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTAAAGGCTGTATCAGCTGTTGGAAAAGCTGGAGGAGAGAAATGGAAATCTTTGACTAAGGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAATTGAGTATGAAAAGGCTATGAATGCTTATAATAACAAGCCAAGTTCAGCGGATGATGAAGATGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAATGAAGACGAAGCAAGTGGAGAGGACGACCACCAAGATGATGAGGACGATGACGAGGATGACGAAGACGACGATGAAGACGATGATTGA 522 0.4272 MTKGKGTGKTSREVLKPVDDRKVGKRKAASKPEKSSAPKTTKKDKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKIEYEKAMNAYNNKPSSADDEDEESDKSKSEVNNEDEASGEDDHQDDEDDDEDDEDDDEDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01615 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Trre13g01615 173 MobiDBLite consensus disorder prediction 9 55 - -
Trre13g01615 173 Gene3D High mobility group box domain 37 141 IPR036910 -
Trre13g01615 173 CDD HMG-box_AtHMGB1-like 56 115 - -
Trre13g01615 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 157 IPR031061 -
Trre13g01615 173 SMART hmgende2 53 124 IPR009071 -
Trre13g01615 173 MobiDBLite consensus disorder prediction 86 173 - -
Trre13g01615 173 Pfam HMG (high mobility group) box 54 123 IPR009071 -
Trre13g01615 173 SUPERFAMILY HMG-box 39 126 IPR036910 -
Trre13g01615 173 MobiDBLite consensus disorder prediction 93 118 - -
Trre13g01615 173 MobiDBLite consensus disorder prediction 127 146 - -
Trre13g01615 173 MobiDBLite consensus disorder prediction 1 60 - -
Trre13g01615 173 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01615 Trre-Chr13 13201583 13202984 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre13g01615 HMG_box 4.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01615 K25507 - gmx:100499704 194.126