Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01606 ATGATTTGCAATTGTTTTGGTGTCTTGAATTTGTGTAAAGGGAAAGGTGAACCTGCTGAGGAGAGACATGAACAAGTGATGGAAACTAAAAGCTTTAGCTATAGCTCATTGAGATCTGCTACAGGAGATTTTCATCCTTCATGCAAAATTGGTGGAGGAGGCTATGGAGTTGTCTACAAGGGTGTTTTAAAGGATGGTACTGAAGTTGCTATCAAACCTCTTTCTGTTGAGTCTAAACAAGGAACTAATGAATTTTTGACAGAAATTGATATGATATCAAATATACAACATCCAAATCTTGTGAAACTAATCGGCTTTTGTATCGAGGGTAATCATCGAATATTAGTGTACGAGTTTCTCAAGAACAATAGCCTCGCTAGTTCTTTACTAGGTACAAAAAGTAAATGTGTTCCTTTGGATTGGCCAAAGAGGGCAGCTATTTGCCGCGGTACAGCATCGGGTCTAAGCTTTCTTCATGAAGAGGCTCAGCCAAACATTGTTCATAGAGATATCAAAGCAAGCAATATATTGTTAGATGAGCATTTCAATCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCGGATAATGTCACACATGTTAGCACTCGAGTTGCAGGAACAATGGGATATCTTGCGCCAGAATATGCGCTTCTAAGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGAATTCTGATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGACAACATTTTGGTTCTTGTCGAATGGGCATGGAAGCTGAAAGAAGAAAACCGGCTTTTAGAACTTGTTGATTCAGAAATAACCGACTATGACGAGAACGAGGTGTATCGGTTCCTTGTAGTTGCTCTATTTTGCACCCAATCAACAGCTCAACATAGACCAACCATGAAACAAGTACTACAAATGCTTTCAAAACAAGTTCATCTTAATGAGAAGGCATTAACTGAGCCTGGTATATACAGATGGAATACATCTTTAAAGACGAGCAGTTCTTTTAACAAGACACCATTGCTGTCATCTCAACTGATCAAGCACAAAAATTTTGAAAATCGACATCAAACCTCGACGCATTTTAGCGGTACAGATATTGTGACAGAGGTGTTTCCTAGATGA 1146 0.3857 MICNCFGVLNLCKGKGEPAEERHEQVMETKSFSYSSLRSATGDFHPSCKIGGGGYGVVYKGVLKDGTEVAIKPLSVESKQGTNEFLTEIDMISNIQHPNLVKLIGFCIEGNHRILVYEFLKNNSLASSLLGTKSKCVPLDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDEHFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDSEITDYDENEVYRFLVVALFCTQSTAQHRPTMKQVLQMLSKQVHLNEKALTEPGIYRWNTSLKTSSSFNKTPLLSSQLIKHKNFENRHQTSTHFSGTDIVTEVFPR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01606 381 Pfam Protein kinase domain 47 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01606 381 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Trre13g01606 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Trre13g01606 381 FunFam cold-responsive protein kinase 1 15 119 - -
Trre13g01606 381 SMART serkin_6 44 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01606 381 Gene3D Phosphorylase Kinase; domain 1 12 119 - -
Trre13g01606 381 PIRSF ILK 3 327 - -
Trre13g01606 381 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Trre13g01606 381 CDD STKc_IRAK 63 316 - -
Trre13g01606 381 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Trre13g01606 381 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 344 - -
Trre13g01606 381 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Trre13g01606 381 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01606 Trre-Chr13 13144056 13147009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01606 20 344 Receptor kinase-like Gene Family AT1G56120 51.376 4.80e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01606 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01606 - - gmx:100816683 598.586