Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01603 ATGATAGTTGTGGATAGCAATGGTCAATCAAGGGGATATGGTTTTGTTCAATTGGATAATGATGAGTCTGCAAAGGATGCCATTGAACAATTGGATGACATGTTGATCAATGATAAGAAAGTTTATGGCGGGCATTTTATTCGGCGACAAGAAAGGTCAAGAAATGGATCACCTAAGTTCACAAATGTGTATATAAAATACCTTTCTGAAACATATATCAATGAGGACCATAAACAACTCTTCAACATATATCAATGA 258 0.3488 MIVVDSNGQSRGYGFVQLDNDESAKDAIEQLDDMLINDKKVYGGHFIRRQERSRNGSPKFTNVYIKYLSETYINEDHKQLFNIYQ 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01603 85 Gene3D - 1 55 IPR012677 -
Trre13g01603 85 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 41 IPR000504 GO:0003723
Trre13g01603 85 PANTHER RNA BINDING PROTEIN 5 82 - -
Trre13g01603 85 SUPERFAMILY RNA-binding domain, RBD 2 82 IPR035979 GO:0003676
Trre13g01603 85 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 41 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01603 Trre-Chr13 13111119 13111376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01603 2 84 Eukaryotic Initiation Factors Gene Family AT4G34110 57.143 2.90e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01603 K13126 - gmx:100808877 115.546