Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01602 ATGTGTTCTGTGTTCATGCGACATCGTGCCTTCATAGATAACAAGGCATTACATGATGCTTTTTCTGCCTTTGGTATTGTGCTTTCCTGTAAGGTAGTTGTGGATAGCAATGGTCAATCAAGGGGATATGGTTTTGTTCAATTAGATAATGATGAGTCTGCAAAGTATGTCATTGAACAATTGGATGACATGTTGATCAATGATAAGAAAGTTTATGTCGGGCATTTTATTCGGTGA 237 0.3755 MCSVFMRHRAFIDNKALHDAFSAFGIVLSCKVVVDSNGQSRGYGFVQLDNDESAKYVIEQLDDMLINDKKVYVGHFIR 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01602 78 PANTHER RNA BINDING PROTEIN 12 78 - -
Trre13g01602 78 SUPERFAMILY RNA-binding domain, RBD 12 75 IPR035979 GO:0003676
Trre13g01602 78 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Trre13g01602 78 SMART rrm1_1 3 74 IPR000504 GO:0003723
Trre13g01602 78 Gene3D - 8 78 IPR012677 -
Trre13g01602 78 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Trre13g01602 78 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 71 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01602 Trre-Chr13 13110306 13110542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01602 12 78 Eukaryotic Initiation Factors Gene Family AT4G34110 67.164 1.23e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01602 K13126 - apan:127264386 107.842