Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01592 ATGAGCATTTCATTTGTCATAATCTCTAACAAAACAGCATTCCAATTCCTATGTTGTTTTCTTCTATACATTACCATATTTCATTACTCTTCAACTGCATCAACCTTGCAAGGAAATGAAACTGATTTACAAGCTTTACTTGACTTCAAGAGTAGAATAATTAAAGATCCATTTCACACACTAAGTTTATGGAATGATTCAATCCATCACTGCAACTGGTTAGGAATCACTTGTAACATCTTCAATGGAAGAGTCATGCATTTGATCCTTGCAGACATGACACTAGCAGGAACTCTTACACCATCAATAGGAAATCTTACATACCTCACAAAACTCAACCTTAGAAATAATAGTTTCCATGGAGAGTTTCCTCAACAAGTTGGAAAATTATTATATCTTCAACATCTAAATATTAGTTATAATTCATTTAGTGGCAACATTCCAAGTAATCTAAGTCATTGCATAGAGTTAAGCATATTATCTTCTGGCCATAACAATTTCACAGGAAAAATTCCAACATGGATAGGAAATTTATCTTTATCTCTACTTAACCTTGCAGTTAACAATTTGCATGGAACCATACCAAATGAGATAGGAAAGTTATCAAGACTAACACTTTTTGCAGTAAATGGAAATCATTTGCATGGAAAAATTCCTCTTGAAGTTTTTAATATTTCTTCCTTATCCTTTCTTACATTTTCTCAAAATAATTTTCATGGTAACTTACCTTATGATATTGGTTTCACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAATGATTTCACTGGAACAATACCTGAATCAATCTCTAATGCTTCAAGATTGAAAATTCTTGACTTTGCTGAAAATAGTCTCATTGGAACACTTCCTAAGAACATAGGAAGATTGACCCTTTTGACAAGACTCAATTTTGATTCCAATAGACTTGGAAATGGTAAAGATGGTGACCTGAATTTTATTACTTCTTTGAATAATTGTACTTTTCTTGAAGTTTTAGGTCTTGCCGATAATCGTTTTGGAGGAGAATTGCCTAGTTCAATTGCTAATCTTTCAACCAATTTGAATGATCTTGATTTAGGTAAAAATGCAATATATGGAAGTATCCCTATTGGAATAAGTAATCTTGTTAACTTGACAAGTTTTGGAGTGGGAAATAATAGGTTAAGTGGTTTTGTTCCTAATACAATAGGTATGCTTCAAAAGTTGGTTAATTTAGAATTGTATAGCAACAATTTTTCTGGTGTGATCCCTTCCTCTATAGGAAACTTGACTAGTTTAATAAGTCTACTCATAGAGGATAACAACTTTGAGGGAAGTATACCACAAAGTCTTGGAAATTTGCAAAGTTTGTTGATGCTAAATTTGAGTCATAACAAGCTCAATGGTTCTATACCAAGACAAATACTTTCCTTGTCTTCTCTTTCAATTTACTTAGACTTGTCTCATAATTCTCTCAAAGGCTCCTTGCCTTTTGAAGTAGGTAAGCTTGTTAATCTTGCAGAGTTGGATCTTTCGAAGAATAAATTGTCTGGTATGATTCCGTCCTCACTCGGAAGTTGTGCTAGTTTGGAAAGGCTGCATATGCAGGGAAACTTTTTTGAAGGAAATATTCCTTCAACTCTACAGAATTTGAGAGGTATACAAGATATCGACATGTCATGCAATAATTTATCTGGGAAGATTCCTGAATTTCTTGGTGGGATCAAAGGGTTGATGCATCTCAATCTTTCTTACAATGATTTTGAGGGAGAACTACCAATGAATGGAATATTCAAAAATGCAACTTCCTTTTCAATTAATGGAAATATCAAGCTATGTGGTGGTGTCTCAAAATTAAACCTACCTGCATGTACTATTAAAAAACCCTCTCCCTTTAAAAAATTTCATAACCCTAAGGTCAGTGTCCCTATAGCTAGTGCACTAGTATTTGTACTCTTTCTATCTTGTTTTGTAGCAATATTCATGATAAAAAGATCATCAAGAAAGAAAATTTCAAGAGAAACACTTACTACAAAGAATATGGAACTGGATATTTCTTACATGGAAATTGCGAAGTGCACCGGTGAATTCTCCGATGATAACTTGATTGGCTCAGGAAGTTTTGGCTCTGTGTACAAAGGAAAACTTTCATGTGACGGAACAATTATTGCAATTAAGGTATTGAATCTTGAACAAAGAGGAGCTTCAAAAAGCTTCATCGATGAATGCAATGTTCTAAGAATCATAAGGCACCGTAACCTTCTCAAGATCATAACAGCAATCTCAAGTGTTGATCGTCAAGGTAATGACTTCAAAGCACTTGTGTTTGAGTTCATGTCCAATGGAAGTTTAGAAGATTGGCTGCATCCTATAAATCAGACAAAAAAACTGACATTTTTCCAAAGATTGAACATAGCAATTGATGTTGCTTGTGCACTTGACTATCTACACAACTCTTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATATACTTCTTGACAATGATATGGTAGCACATGTTGGTGACTTTGGTTTAGCTACATTTCTGTTTGAAGAATCATGTGATTCTCCCAAAAATTCAATTATGTCAGCTGGACTAAAGGGCTCTATTGGCTACATCCCTCCAGAGTATGGAGTGGGTGGACACCCTTCTGCACTAGGAGATGTTTACAGTTATGGGATACTATTGCTAGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGCGGCATAGGAATTCAACAGTTTACAGCTTTAGCATTACAAAATCATGCCATAGATATAATTGATCCTTCATTGCTCTATGATCAAGAATTTAATGGAAAAGCCGATGATTATAGTGAAGAGATAGCATTAAGGAAGGAAAATGAACCTGGATACCTTTCTACTATGGAGAATTGTCTGGTTTCTGTGTTGCAACTTGGAGTGTCATGCTCTTCAAATTCACCATGTGAAAGGATACCTATGAATATGGTCGTCAACAAACTGCATGCAATCAAGAACTCATATTTAAGACTTATGAAGAATGAAAGATGA 3042 0.3452 MSISFVIISNKTAFQFLCCFLLYITIFHYSSTASTLQGNETDLQALLDFKSRIIKDPFHTLSLWNDSIHHCNWLGITCNIFNGRVMHLILADMTLAGTLTPSIGNLTYLTKLNLRNNSFHGEFPQQVGKLLYLQHLNISYNSFSGNIPSNLSHCIELSILSSGHNNFTGKIPTWIGNLSLSLLNLAVNNLHGTIPNEIGKLSRLTLFAVNGNHLHGKIPLEVFNISSLSFLTFSQNNFHGNLPYDIGFTLPNLETFAGGVNDFTGTIPESISNASRLKILDFAENSLIGTLPKNIGRLTLLTRLNFDSNRLGNGKDGDLNFITSLNNCTFLEVLGLADNRFGGELPSSIANLSTNLNDLDLGKNAIYGSIPIGISNLVNLTSFGVGNNRLSGFVPNTIGMLQKLVNLELYSNNFSGVIPSSIGNLTSLISLLIEDNNFEGSIPQSLGNLQSLLMLNLSHNKLNGSIPRQILSLSSLSIYLDLSHNSLKGSLPFEVGKLVNLAELDLSKNKLSGMIPSSLGSCASLERLHMQGNFFEGNIPSTLQNLRGIQDIDMSCNNLSGKIPEFLGGIKGLMHLNLSYNDFEGELPMNGIFKNATSFSINGNIKLCGGVSKLNLPACTIKKPSPFKKFHNPKVSVPIASALVFVLFLSCFVAIFMIKRSSRKKISRETLTTKNMELDISYMEIAKCTGEFSDDNLIGSGSFGSVYKGKLSCDGTIIAIKVLNLEQRGASKSFIDECNVLRIIRHRNLLKIITAISSVDRQGNDFKALVFEFMSNGSLEDWLHPINQTKKLTFFQRLNIAIDVACALDYLHNSCETPIVHCDIKPSNILLDNDMVAHVGDFGLATFLFEESCDSPKNSIMSAGLKGSIGYIPPEYGVGGHPSALGDVYSYGILLLEIFTGKRPTNEMFEGGIGIQQFTALALQNHAIDIIDPSLLYDQEFNGKADDYSEEIALRKENEPGYLSTMENCLVSVLQLGVSCSSNSPCERIPMNMVVNKLHAIKNSYLRLMKNER 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01592 1013 Gene3D Phosphorylase Kinase; domain 1 652 773 - -
Trre13g01592 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Trre13g01592 1013 Gene3D Ribonuclease Inhibitor 248 313 IPR032675 -
Trre13g01592 1013 FunFam Inactive leucine-rich repeat receptor-like protein kinase 327 619 - -
Trre13g01592 1013 Gene3D Ribonuclease Inhibitor 163 247 IPR032675 -
Trre13g01592 1013 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 326 - -
Trre13g01592 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 774 1011 - -
Trre13g01592 1013 ProSiteProfiles Protein kinase domain profile. 692 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01592 1013 Gene3D Transferase(Phosphotransferase) domain 1 774 1012 - -
Trre13g01592 1013 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Trre13g01592 1013 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Trre13g01592 1013 Pfam Protein kinase domain 693 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01592 1013 SUPERFAMILY RNI-like 90 472 - -
Trre13g01592 1013 Gene3D Ribonuclease Inhibitor 314 625 IPR032675 -
Trre13g01592 1013 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 324 999 - -
Trre13g01592 1013 SMART serkin_6 692 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01592 1013 SMART LRR_typ_2 498 522 IPR003591 -
Trre13g01592 1013 SMART LRR_typ_2 401 425 IPR003591 -
Trre13g01592 1013 SMART LRR_typ_2 377 400 IPR003591 -
Trre13g01592 1013 SMART LRR_typ_2 449 473 IPR003591 -
Trre13g01592 1013 FunFam LRR receptor-like serine/threonine-protein kinase EFR 663 773 - -
Trre13g01592 1013 SUPERFAMILY L domain-like 354 609 - -
Trre13g01592 1013 Gene3D Ribonuclease Inhibitor 41 156 IPR032675 -
Trre13g01592 1013 SUPERFAMILY Protein kinase-like (PK-like) 677 998 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01592 Trre-Chr13 13013967 13017159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01592 39 1007 Receptor kinase-like Gene Family AT3G47570 44.732 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre13g01592 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01592 - - gmx:100785230 1450.65