Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01583 ATGAAAGATGAAAATGGGAACTCCAAATGTTTTGGTTTCGTGAATTTCCAAAGGTCGGATTCAGCAGTTGTTGCAGTTGAAAGGTTGAATGGGACAACAACTAATGATGGAAAGGTTCTATTTGTCAGGAGAGCTCAGAGAAAAACAGAAAGGGAGGCAGAGCTGAAAGCCAAATTAGCACAAGCAAAGTTAAAAAGGTATGATATCTTTTTATCTTTACTTGTGCTAATTTGGCTTTCAATTCTGCCTCCCTTTCCGATTTTCTCTAAGCTCTCCCGACAATTAAAACATTTCCATCATTGGTTGTGGTGCCATTCAACTGCAACAACTTCCGAATCCGACATTTGGAAATTCACGAAACCAAAACATTTGGAGTTCCCGTTCTCATCTTTCATGACCACAACACTCGTTTTTTCCCCATAA 423 0.3924 MKDENGNSKCFGFVNFQRSDSAVVAVERLNGTTTNDGKVLFVRRAQRKTEREAELKAKLAQAKLKRYDIFLSLLVLIWLSILPPFPIFSKLSRQLKHFHHWLWCHSTATTSESDIWKFTKPKHLEFPFSSFMTTTLVFSP 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01583 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Trre13g01583 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 36 IPR000504 GO:0003723
Trre13g01583 140 Gene3D - 1 68 IPR012677 -
Trre13g01583 140 PANTHER RNA BINDING PROTEIN 1 78 - -
Trre13g01583 140 Coils Coil 45 65 - -
Trre13g01583 140 SUPERFAMILY RNA-binding domain, RBD 1 52 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01583 Trre-Chr13 12885447 12885869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01583 1 68 Eukaryotic Initiation Factors Gene Family AT1G22760 50.000 5.24e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01583 K13126 - mtr:120577874 94.3597