Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01578 ATGAATAGAGGAATTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTATTTGAAGAAAACAAGGGTTCTAAATGGACTCAAGAAGAGAATAAGCTATTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTAGCAGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCCGGTTTGATACCGAGTCCTGGTTATACAACTAGTTCTTTTACATTGGATTGGGATAATAATCAAAGCTTTGATGAGTTCAAGCAATTTTGTAGTGTTGGTGAGAAAAGGGGCGGTTCGACTCGGCCGTCTGAGCAGGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAGGAGCATAGGCAATTTCTGTTGGGTCTGAAGAAGTATGGTAAGGGAGACTGGAGAAATATCTCTAGGAATTTCGTGACCACAAGGACACCAACTCAAGTTGCAAGTCATGCTCAGAAGTATTTCATTCGGCAAGTTTCAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGATATCACCGTGGTTAATCTCCAAGAAACTAAATCTCCTTCATCAGACAGTAACAACTCTTCTTCTCCTGACTATTTGGTGAATGCGGCTAATCAACCGCAGAATCATAATTTGTCTGACATGGTTAAGCAGGAATATGACTTGAAATTACCAGATGAGGAGGGTATGCCATTTGTTTTCAATTCAACCAAAGGAAACATGTTTGTGGCACCATTGTGCGGGATTTCTTCACAAGAATCGAAATCACCGGGACATAATATACTCCGAGGCACTCACCATGGATTCCAGTTTTCACCTTTTGATACTATTTTCCAAATGCAATCTATGCAGCATCAATGA 927 0.4013 MNRGIEVLSPASYIQNSNWLFEENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPSPGYTTSSFTLDWDNNQSFDEFKQFCSVGEKRGGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSDSNNSSSPDYLVNAANQPQNHNLSDMVKQEYDLKLPDEEGMPFVFNSTKGNMFVAPLCGISSQESKSPGHNILRGTHHGFQFSPFDTIFQMQSMQHQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01578 308 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Trre13g01578 308 MobiDBLite consensus disorder prediction 122 136 - -
Trre13g01578 308 FunFam transcription factor MYB1R1 134 185 - -
Trre13g01578 308 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Trre13g01578 308 Gene3D - 20 88 - -
Trre13g01578 308 MobiDBLite consensus disorder prediction 117 136 - -
Trre13g01578 308 MobiDBLite consensus disorder prediction 203 233 - -
Trre13g01578 308 FunFam Transcription factor SRM1 21 88 - -
Trre13g01578 308 Gene3D - 134 184 - -
Trre13g01578 308 CDD SANT 135 180 IPR001005 -
Trre13g01578 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Trre13g01578 308 CDD SANT 28 74 IPR001005 -
Trre13g01578 308 SMART sant 25 77 IPR001005 -
Trre13g01578 308 SMART sant 132 182 IPR001005 -
Trre13g01578 308 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Trre13g01578 308 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Trre13g01578 308 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Trre13g01578 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 257 IPR043363 -
Trre13g01578 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Trre13g01578 308 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Trre13g01578 308 Pfam Myb-like DNA-binding domain 27 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01578 Trre-Chr13 12833069 12834711 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g01578 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01578 - - var:108329798 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01578 13 12833069 12834711 Trre13g01578 13 12833069 12834711 ECH
Trre13g01578 13 12833069 12834711 Trre9g04315 9 50972277 50973675 ECH