Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01563 ATGATTTCTATGGACTTGAATGCCTCCCCTGTGCCGGAGGAAGATGACGATCCTTTTGAAGGCCAGGTAGAAGAGTATAATGCGCCGCGAAAAGAAGAGTATATTGCGCCAAAAGAGCACATAGAAAGTGGAGCTGATATAGCGCGCCGGGAACGTGAAGAAAGAAAGATACGGTTGAAAAGAGAACGTTCAGATGACAGGCCTGTGCAAGTATCACAGGCACCTGGATATGATAATTTTTTCCATAATAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCGGGTTGGTTGAATTGCCCTTCATCTGGCCAGGAAATCTTTGGCTTGATACCTTCTAAGGTTCCATTGGGTGAAGCCTTCAATGACTATATTGTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTTAAGATCCAATGCAAGGGCCGCGGTTCAGTACCTGATAATTCATCTGTTAATCATTTTGTGTACGAGGTTATACAATTTTTATCACATCAAAAACACTCAAAGAAGTATGTACTTGTTCATTGTACACACGGTCATAATCGTACAGGATATATGATCATCCATTATTTAATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGTCCTCCAGGAATCTATAAACCTGAGTATATTGATTCATTATATAAATTCTATCATGAAAAGAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCCGAACTCGTGGATCTCAATGGTGAAGCAGCTCCAGATGACGGCGACGACGACGACGATGATGGAGTACCAGGTCCTCCGTTGCATGAGAACCATGAGATTGACACTATAATGACAAATGATGATGTTTTGGGAGATGAGGTACCTAATGATCAACAATATGCATTTCGGCAGTTCTGCTTTCAGATACTCAAATTGGGGGCTGGGGCCAGAGGACACATGCAATTTCCAGGGTCGCACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTACTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGCTACTTGATTGATAGAAACTTCAATTTTAGAAGAGTTCAAATGAGGTTTCCATGCAGGGGTACAAATGATGGCTTGGCAGAGAAGACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTAATATATGATCTGATGGCAGTCAACCTCGTTTCAGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTAATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCGAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGAAGGTTCAGACCCCTTGCTTTATTCTGGAAAGATTATCGAGTGTGCTTGGGATAGTGATAGAAACGAATGGATATTCAAGCGAGTCAGAACAGACAAGTCAACTCCCAATGACATCAATACTTACAAGAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATGTCCTGTTGACTGAAATAAACGAGATAATCCGTCTTCCCATGTATGCCGACAGGATAAGAATTGATAGCAAAGGACATCACCACAATATAGCTAGGCGAAGGTAG 2070 0.4077 MISMDLNASPVPEEDDDPFEGQVEEYNAPRKEEYIAPKEHIESGADIARREREERKIRLKRERSDDRPVQVSQAPGYDNFFHNKILKSYDRSKLPPGWLNCPSSGQEIFGLIPSKVPLGEAFNDYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPDNSSVNHFVYEVIQFLSHQKHSKKYVLVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDSLYKFYHEKKPEMIVCPPTPEWKRTPELVDLNGEAAPDDGDDDDDDGVPGPPLHENHEIDTIMTNDDVLGDEVPNDQQYAFRQFCFQILKLGAGARGHMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNLVSVIERPFCERWKMLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLNSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEEGSDPLLYSGKIIECAWDSDRNEWIFKRVRTDKSTPNDINTYKKVMRSIRDNITEDVLLTEINEIIRLPMYADRIRIDSKGHHHNIARRR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01563 689 Gene3D Protein tyrosine phosphatase superfamily 72 287 IPR029021 -
Trre13g01563 689 FunFam mRNA capping enzyme family protein 90 306 - -
Trre13g01563 689 Pfam Dual specificity phosphatase, catalytic domain 146 266 IPR000340 GO:0008138|GO:0016311
Trre13g01563 689 FunFam mRNA-capping enzyme 582 675 - -
Trre13g01563 689 PIRSF mRNA_capping_HCE 80 689 IPR017074 GO:0004484|GO:0006370|GO:0140818
Trre13g01563 689 Gene3D DNA ligase/mRNA capping enzyme 324 560 - -
Trre13g01563 689 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 283 IPR029021 -
Trre13g01563 689 ProSitePatterns Tyrosine specific protein phosphatases active site. 213 223 IPR016130 GO:0016311|GO:0016791
Trre13g01563 689 SMART dsp_5 128 268 IPR020422 GO:0006470|GO:0008138
Trre13g01563 689 FunFam mRNA capping enzyme, putative 324 558 - -
Trre13g01563 689 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 325 561 - -
Trre13g01563 689 CDD Adenylation_mRNA_capping 336 561 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g01563 689 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 272 IPR020422 GO:0006470|GO:0008138
Trre13g01563 689 CDD RNA_5'-triphosphatase 97 264 - -
Trre13g01563 689 ProSiteProfiles ATP-dependent DNA ligase family profile. 447 588 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre13g01563 689 PANTHER MRNA-CAPPING ENZYME 89 672 - -
Trre13g01563 689 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g01563 689 Pfam mRNA capping enzyme, C-terminal domain 565 658 IPR013846 -
Trre13g01563 689 Pfam mRNA capping enzyme, catalytic domain 365 560 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g01563 689 Gene3D - 599 667 IPR012340 -
Trre13g01563 689 MobiDBLite consensus disorder prediction 291 317 - -
Trre13g01563 689 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 191 260 IPR000387 GO:0016311|GO:0016791
Trre13g01563 689 SUPERFAMILY Nucleic acid-binding proteins 563 674 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01563 Trre-Chr13 12674758 12683806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01563 1 689 Protein tyrosine phosphatase (PTP) family AT3G09100 66.859 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01563 K13917 - gmx:100803597 1220.3