Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01562 ATGATGATTTCTATGGACTTGAATGCCTCCCCTGTGCCGGAGGAAGATGACGATCCTTTTGAAGGCCAGGTAGAAGAGTATAATGCGCCGCGAAAAGAAGAGTATATTGCGCCAAAAGAGCACATAGAAAGTGGAGCTGATATAGCGCGCCGGGAACGTGAAGAAAGAAAGATACGGTTGAAAAGAGAACGTTCAGATGACAGGCCTGTGCAAGTATCACAGGCACCTGGATATGATAATTTTTTCCATAATAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCGGGTTGGTTGAATTGCCCTTCATCTGGCCAGGAAATCTTTGGCTTGATACCTTCTAAGGTTCCATTGGGTGAAGCCTTCAATGACTATATTGTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTTAAGATCCAATGCAAGGGCCGCGGTTCAGTACCTGATAATTCATCTGTTAATCATTTTGTGTACGAGGTTATACAATTTTTATCACATCAAAAACACTCAAAGAAGTATGTACTTGTTCATTGTACACACGGTCATAATCGTACAGGATATATGATCATCCATTATTTAATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGTCCTCCAGGAATCTATAAACCTGAGTATATTGATTCATTATATAAATTCTATCATGAAAAGAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCCGAACTCGTGGATCTCAATGGTGAAGCAGCTCCAGATGACGGCGACGACGACGACGATGATGGAGTACCAGGTCCTCCGTTGCATGAGAACCATGAGATTGACACTATAATGACAAATGATGATGTTTTGGGAGATGAGGTACCTAATGATCAACAATATGCATTTCGGCAGTTCTGCTTTCAGATACTCAAATTGGGGGCTGGGGCCAGAGGACACATGCAATTTCCAGGGTCGCACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTACTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGCTACTTGATTGATAGAAACTTCAATTTTAGAAGAGTTCAAATGAGGTTTCCATGCAGGGGTACAAATGATGGCTTGGCAGAGAAGACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTAATATATGATCTGATGGCAGTCAACCTCGTTTCAGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTAATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCGAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGAAGGTTCAGACCCCTTGCTTTATTCTGGAAAGATTATCGAGTGTGCTTGGGATAGTGATAGAAACGAATGGATATTCAAGCGAGTCAGAACAGACAAGTCAACTCCCAATGACATCAATACTTACAAGAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATGTCCTGTTGACTGAAATAAACGAGATAATCCGTCTTCCCATGTATGCCGACAGGATAAGAATTGATAGCAAAGGACATCACCACAATATAGCTAGGCGAAGGTAG 2073 0.4076 MMISMDLNASPVPEEDDDPFEGQVEEYNAPRKEEYIAPKEHIESGADIARREREERKIRLKRERSDDRPVQVSQAPGYDNFFHNKILKSYDRSKLPPGWLNCPSSGQEIFGLIPSKVPLGEAFNDYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPDNSSVNHFVYEVIQFLSHQKHSKKYVLVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDSLYKFYHEKKPEMIVCPPTPEWKRTPELVDLNGEAAPDDGDDDDDDGVPGPPLHENHEIDTIMTNDDVLGDEVPNDQQYAFRQFCFQILKLGAGARGHMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNLVSVIERPFCERWKMLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLNSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEEGSDPLLYSGKIIECAWDSDRNEWIFKRVRTDKSTPNDINTYKKVMRSIRDNITEDVLLTEINEIIRLPMYADRIRIDSKGHHHNIARRR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01562 690 Pfam Dual specificity phosphatase, catalytic domain 147 267 IPR000340 GO:0008138|GO:0016311
Trre13g01562 690 SMART dsp_5 129 269 IPR020422 GO:0006470|GO:0008138
Trre13g01562 690 Gene3D DNA ligase/mRNA capping enzyme 325 561 - -
Trre13g01562 690 MobiDBLite consensus disorder prediction 292 318 - -
Trre13g01562 690 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 326 562 - -
Trre13g01562 690 CDD Adenylation_mRNA_capping 337 562 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g01562 690 PIRSF mRNA_capping_HCE 81 690 IPR017074 GO:0004484|GO:0006370|GO:0140818
Trre13g01562 690 PANTHER MRNA-CAPPING ENZYME 90 673 - -
Trre13g01562 690 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 284 IPR029021 -
Trre13g01562 690 FunFam mRNA-capping enzyme 583 676 - -
Trre13g01562 690 ProSiteProfiles Dual specificity protein phosphatase domain profile. 117 273 IPR020422 GO:0006470|GO:0008138
Trre13g01562 690 ProSiteProfiles ATP-dependent DNA ligase family profile. 448 589 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre13g01562 690 MobiDBLite consensus disorder prediction 1 51 - -
Trre13g01562 690 CDD RNA_5'-triphosphatase 98 265 - -
Trre13g01562 690 FunFam mRNA capping enzyme, putative 325 559 - -
Trre13g01562 690 Gene3D Protein tyrosine phosphatase superfamily 73 288 IPR029021 -
Trre13g01562 690 MobiDBLite consensus disorder prediction 24 51 - -
Trre13g01562 690 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 192 261 IPR000387 GO:0016311|GO:0016791
Trre13g01562 690 ProSitePatterns Tyrosine specific protein phosphatases active site. 214 224 IPR016130 GO:0016311|GO:0016791
Trre13g01562 690 Pfam mRNA capping enzyme, C-terminal domain 566 659 IPR013846 -
Trre13g01562 690 Pfam mRNA capping enzyme, catalytic domain 366 561 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g01562 690 FunFam mRNA capping enzyme family protein 91 307 - -
Trre13g01562 690 Gene3D - 600 668 IPR012340 -
Trre13g01562 690 SUPERFAMILY Nucleic acid-binding proteins 564 675 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01562 Trre-Chr13 12674758 12683809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01562 1 690 Protein tyrosine phosphatase (PTP) family AT3G09100 66.906 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01562 K13917 - gmx:100803597 1222.22