Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01560 ATGGCTAATTTCAATACAATCACTGATCTTGCTCTCAATCTTTTGAAAGGTCCTATGAATCCAAATCCAATTACTGCTCGAGATAAGTTGATAGCTGAGCTGCAAATTAGATATCGCACTTTTTATGTTGAATTTGATATAAACGAAGGTGCTGTAAGACTACCGAAGATGTTTTCTCAAGATTTTGGGCATGATGTTAGGCGTTTTGCTAGATTGACAGATCCATTAGGTAATCAGTTCGAAGTTTTAGTGGAAAAAATTAATGGTCATGTTTATCTAACGTGGGGATGGAAAGCGTTAAAAGATTTCTACAACATTTGTCTTGGGGCGTGGATAATTTTGCGGTACACCGGAATGGGACAATTTGGAATCGTCTTAAAGGATAGGTTCGGAATATTAATAGATCCACCGACTTTTGTGCCTCCGATGAAATTTAAGCTAGACCTCTCGCGTCTTACTCCAGAATTCATAGATGATCTTCCGGAAGACACTGATCTGCTTTCATATAATCGTGATGGTGCATCATTTGGTATAGAGTATGATAAAAAAAAATTAACTTATTATGACATTAATGATGGGTTTTTGATCTTGCCCTATGAAGATTTTGGTGAGAAGGCTTTGCATAAGACAACAACTACACTGAATTTAATTGACGATTGTGGGAACAAGTGCAACTGTGTGCTTATATTTGGTTCTTTTCCGTATAAGCATTTCAAAATTGGTGGCGAATGGAAAAGATTGGTTGCGGCGAGAAGACTTCAAGTGGGTGATCATATAAAAGTTGGTGGTTACAAACGTGAAAAAAATGAAGATCTTTACTTGATAATTTGTCATTGA 837 0.3656 MANFNTITDLALNLLKGPMNPNPITARDKLIAELQIRYRTFYVEFDINEGAVRLPKMFSQDFGHDVRRFARLTDPLGNQFEVLVEKINGHVYLTWGWKALKDFYNICLGAWIILRYTGMGQFGIVLKDRFGILIDPPTFVPPMKFKLDLSRLTPEFIDDLPEDTDLLSYNRDGASFGIEYDKKKLTYYDINDGFLILPYEDFGEKALHKTTTTLNLIDDCGNKCNCVLIFGSFPYKHFKIGGEWKRLVAARRLQVGDHIKVGGYKREKNEDLYLIICH 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01560 278 PANTHER B3 DOMAIN-CONTAINING 42 258 - -
Trre13g01560 278 SUPERFAMILY DNA-binding pseudobarrel domain 182 259 IPR015300 -
Trre13g01560 278 Gene3D - 36 129 IPR015300 -
Trre13g01560 278 SUPERFAMILY DNA-binding pseudobarrel domain 41 123 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01560 Trre-Chr13 12657395 12658504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01560 47 126 B3 DNA Binding Superfamily AT3G18990 28.750 6.40e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01560 - K15449 tpra:123886139 276.174