Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01556 ATGCTTCAGATTCGTCTTAGCAAGAATCCTTCGTCTGATGGATCGGCAGGGGTGAAGCATTCACCTGTGGAGACTGTTACGGTTGCATGTCCTGACCATTTAGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGAACAGCTACTGGTTCTTCCGTTGTTAGGAATGTGGGTCGGAGATCTCGCCGTCAACTTGGTGAGCGGGTTCATTTCTGTGTTCGCTGTGATTACCCGATTGCTATTTATGGACGGCTGAGCCCTTGCGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCATTGTGCTACCTATGTGATGAACGCATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGTCATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCAGGAATTGCACGCCGATCTTCTTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGTTCGAGGCCCCCAAAGGCAAGTTTTTTCACCAGGTTCGAATTCTCAACCCCATGATCTGGAAGACAGAACCCGTCGGCAACCAACAAGAGATCAGACTCCTTCAAGACCAACAATGCAGCAAAAGCCACCATTTTTCGGCCAACATCACTCCTCAGATACCATGTCTGGTTCTGTTGGAGGTATGCAACAGGGAATTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGTTTACCGACAGGCAGCAATCAGTTGGTCCAGATAACTCATTTCCCGAGTATCCAACAATGCACCCTGCACAACCTGCCAATGTCCCCCCGCACTCAAACCCAATGCTGAACCCACCCGTGCCATTTGGTTATCCCCCTTACCCGCAAGACCGGTCCCAACCATTTTATGCTGCTCCCTATGATAATATGCCTAGGCAGGACTCAGCTTCTGATATAGGTGGAGACCCAAATTCATTAATGGGTTTCCCTCAAGGTGTCCCTAATGGCCCAAATTTTCAAGGAAATTATCCCCAGCCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGGTGGTGGCATAGTTGTGGATCCAAGGGATGCCAAAGGTATACTGGCACCACAACCCATGGCCCTCCCACCACCACCGCCGCCACCAGCACACATGATGAAACAGAACTACTATTCTGGTGAGCATGGACATGATGGTCAAGGTTATGGCTGGCAGCATGATAACCGTGACAGTTTTAATGGTCAAGGCTAA 1308 0.4855 MLQIRLSKNPSSDGSAGVKHSPVETVTVACPDHLVLADLPVAKGIGTATGSSVVRNVGRRSRRQLGERVHFCVRCDYPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILVCAAPHCLKSFFKRAEFESHIQELHADLLPSNPDKEDGNESEAQSVRQPTASDSTVRGPQRQVFSPGSNSQPHDLEDRTRRQPTRDQTPSRPTMQQKPPFFGQHHSSDTMSGSVGGMQQGIHQQSFDMQQHPPQEPSQFTDRQQSVGPDNSFPEYPTMHPAQPANVPPHSNPMLNPPVPFGYPPYPQDRSQPFYAAPYDNMPRQDSASDIGGDPNSLMGFPQGVPNGPNFQGNYPQPWNAAGVPFEQAQGGGIVVDPRDAKGILAPQPMALPPPPPPPAHMMKQNYYSGEHGHDGQGYGWQHDNRDSFNGQG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01556 435 MobiDBLite consensus disorder prediction 151 274 - -
Trre13g01556 435 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Trre13g01556 435 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Trre13g01556 435 MobiDBLite consensus disorder prediction 387 435 - -
Trre13g01556 435 MobiDBLite consensus disorder prediction 209 274 - -
Trre13g01556 435 MobiDBLite consensus disorder prediction 166 195 - -
Trre13g01556 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 425 IPR040383 GO:0016567|GO:0061630
Trre13g01556 435 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Trre13g01556 435 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Trre13g01556 435 MobiDBLite consensus disorder prediction 151 165 - -
Trre13g01556 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 153 IPR013087 -
Trre13g01556 435 MobiDBLite consensus disorder prediction 390 404 - -
Trre13g01556 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01556 Trre-Chr13 12584597 12588370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01556 1 431 C2H2 Transcription Factor Family AT5G01160 43.694 1.45e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01556 K15685 - gmx:100817582 681.019