Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01510 ATGACAACTTTGCAAATGACCCATGTTGATTTAGAACAAGGAAATCATCATCAACAACAACAACAACAACAACAACATCATCATCATAATCATAGTCATAATCATAGTTCTGTGAGTGGTGAAGGTAGTTTATGTTTTTCTGATGCTGATGATGGTTCAAGCTATTCACGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATCCTGAGCTTGGAGGTGGTGGTGTTCATGATTCTGGTAGAGTTTCTTCTGTAACTGATTGTTCTGTTGAACTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTAGAGAAAGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAATCTGGTCCTCCAATTGAATTGGGTTGTTCTTGTAAAGAAGATTTAGCTGCTGCTCATAAAAACTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCAGTAGCGCGAAATGTTTACAGTGCAAATGAGGAATCAACGGAGAACGTAAGTGACAATAACAATGCTACCGCATCATCCACGCTCTCAACAGCTGCTCCTACAGCAGAAACTCAAAGATTTTGGCACGGCCATCGTTTCTTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCATTTCAACATGCCATCAACTTAG 735 0.385 MTTLQMTHVDLEQGNHHQQQQQQQQHHHHNHSHNHSSVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPELGGGGVHDSGRVSSVTDCSVELEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSANEESTENVSDNNNATASSTLSTAAPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPST 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01510 244 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g01510 244 MobiDBLite consensus disorder prediction 182 202 - -
Trre13g01510 244 SMART ringv_2 119 172 IPR011016 GO:0008270
Trre13g01510 244 CDD RING_CH-C4HC3_MARCH 120 172 - -
Trre13g01510 244 ProSiteProfiles Zinc finger RING-CH-type profile. 112 178 IPR011016 GO:0008270
Trre13g01510 244 MobiDBLite consensus disorder prediction 1 43 - -
Trre13g01510 244 PANTHER ZINC FINGER, RING-CH-TYPE 20 243 - -
Trre13g01510 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 183 IPR013083 -
Trre13g01510 244 Pfam RING-variant domain 120 171 IPR011016 GO:0008270
Trre13g01510 244 SUPERFAMILY RING/U-box 117 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01510 Trre-Chr13 12241877 12245157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01510 84 244 C3H Transcription Factor Family AT5G05830 59.877 3.32e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01510 - - gmx:100808666 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01510 13 12241877 12245157 Trre13g01510 13 12241877 12245157 ECH
Trre13g01510 13 12241877 12245157 Trre9g04286 9 50739409 50741804 ECH